Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1416 ATGGCCTCAAAACATATAGGTTTTAGCATCAAGCTAACTCTGACGGTAGTTTTTCTAACAAGCCAGGTTGTGTTGTCTGCCGATACACCAATGCCTCCTGATAAGACTCAATTGGGGCAATGGTTTTCAAATAATGTAAAGCCTTTAGAGAGCAGAAAGGGTACCCTAGATAGTGAATTAGAAGCTGCTGAACAAGGCAAGACAGTTATTAAGGTAAGCCAAGATGGGAAAGGGCAATTCAAGACCATCACGGATGCCCTTAAAAGCATACCTAGCGGAAACAAGAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTGGTTGAGGCAACAAAACCTTTCATCACCTTCTATGGGACCCCTGGGCAAATGCCAACATTGACCTATGGGGGCACGGCAAAACAATATGGCACTGTCGAAAGTGGGACATTGTCTGTTTTATCAGACTACTTTGTGGGGACAAACATAATAGTCCGGAACTCCGCACCAAGACCTGGTCTTAACACGGTAGGAGGTCAAGCAGTTGCATTACGAGTTTCTGGAGACAAAGCCACATTTTATAATTGCCAGCTTTATAGTTACCAAGACACATTGTTGGATGATGCAAAGAGACATTTTTTCAAAGACTGCTTCATTGAAGGAACTGTTGATTACATTTTTGGAAGTGGAAAGTCACTATATGTGAATTGTGAACTAAGAACGCTAGGCGATGAAGGGTTTACTTTTATAACAGCACAAGCAAGAAAAAGTACGAAAGAGGATAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAAAAGGTGTTTACTTAGGAAGAGCATGGTTCGGTTATTCCACAGTTATCTTTTCTTACTGTAACTTAGGCAACATTTTCAACAAGGAAGGATGGAGTGACAACAATAAAAAGGAATTTGACAAAACTCTTTATTTTGGAGAGTATATGAACACAGGACCTGGTGCAGATGCCACAGGACGTTCTAAATTGACAAGGAAACTTACATACTCAGAGGTTCAGAATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGATACTTCCTCCTCCCAAAGTATGA 1101 0.4087 MASKHIGFSIKLTLTVVFLTSQVVLSADTPMPPDKTQLGQWFSNNVKPLESRKGTLDSELEAAEQGKTVIKVSQDGKGQFKTITDALKSIPSGNKKRVILHIGPGTYKEKIVVEATKPFITFYGTPGQMPTLTYGGTAKQYGTVESGTLSVLSDYFVGTNIIVRNSAPRPGLNTVGGQAVALRVSGDKATFYNCQLYSYQDTLLDDAKRHFFKDCFIEGTVDYIFGSGKSLYVNCELRTLGDEGFTFITAQARKSTKEDNGFSFVHCELTGTGKGVYLGRAWFGYSTVIFSYCNLGNIFNKEGWSDNNKKEFDKTLYFGEYMNTGPGADATGRSKLTRKLTYSEVQNYLGLGMIEGSKWILPPPKV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1416 366 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Vra11g1416 366 Gene3D - 68 363 IPR012334 -
Vra11g1416 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 361 - -
Vra11g1416 366 Pfam Pectinesterase 70 348 IPR000070 GO:0030599|GO:0042545
Vra11g1416 366 PANTHER PECTINESTERASE 63-RELATED 35 361 - -
Vra11g1416 366 SUPERFAMILY Pectin lyase-like 67 360 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1416 Vra-Chr11 17184101 17185635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1416 8 364 Carbohydrate Esterase AT5G07420 50.559 1.06e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1416 K01051 - gmx:100813174 494.197