Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1409 ATGGCAGAGCGCGGAGGCGGTGATCGCGGCGGTTTCGGGCGTGGCTTCGGCGGGCGCGGGCGTGGTGGTGACAGGGGTCGTGGACGCCGCCGAGGGCCTCGCCGTGAGGAGGAGGAGAAGTGGGTCCCTGTTACGAAGCTCGGGCGTCTGGTGAAGGAGGGCAGAATCCGAAGCTTGGAACAGATCTACCTCCACTCCCTTCCCATCAAGGAACACCAAATCATTGACACCCTCGTGGGTCCCACCCTCAAGGACGAGGTCATGAAAATCACGCCGGTCCAGAAGCAGACCCGGGCCGGTCAACGAACCCGGTTCAAGGCCTTCGTTGTTGTCGGCGACGGTAATGGTCACGTCGGTCTCGGCGTTAAGTGTAGCAAGGAGGTGGCCACCGCCATTCGCGGCGCCATCATTTTGGCGAAGCTTTCCGTTATCCCCGTTAGGAGAGGGTACTGGGGCAACAAGATCGGAAAGCCCCACACCGTTCCGTGCAAGGTTACGGGAAAGTGCGGGTCCGTTACCGTCAGGATGGTTCCTGCGCCTCGGGGTTCGGGAATCGTGGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGAATTGATGATGTCTTCACCTCCTCCAGAGGATCCACCAAGACCCTTGGCAACTTCGTTAAGGCCACTTTTGATTGCTTGATGAAAACCTATGGATTCCTGACACCAGAATTCTGGAAGGAGACTCGTTTTACCAAATCCCCATTCCAAGAGTACACTGATCTGTTGGCAAAACCAACAGGGAAGACCCTTATCTTGGAGGAGGAGAGGGTGGATGCTTGA 816 0.5784 MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTGKTLILEEERVDA* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1409 271 Gene3D - 146 239 IPR014721 -
Vra11g1409 271 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Vra11g1409 271 Gene3D - 40 145 - -
Vra11g1409 271 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra11g1409 271 TIGRFAM uS5_euk_arch: ribosomal protein uS5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vra11g1409 271 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 269 - -
Vra11g1409 271 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Vra11g1409 271 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra11g1409 271 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vra11g1409 271 MobiDBLite consensus disorder prediction 1 39 - -
Vra11g1409 271 PANTHER RIBOSOMAL S SUBUNIT 1 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra11g1409 271 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1409 Vra-Chr11 17068950 17070810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1409 37 259 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.583 3.65e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1409 K02981 - gmx:100810363 482.641