Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1399 ATGGATCAACCAAATCCACCACTCTCCTCCAAACCCAAACTCGCTTCAGAGTCGCCGCTCCACCGCGTCACTCCCACCTCTAACCGTTTTCGCAGCTCCCAGCTTCTCAGGGAGAGAGAAAGCAAGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCCGAAGGGACCGACTCAACGAACACTTCCAAGAGCTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCTCACGAACTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGGCATCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATGGACTGCAATTGACCACTCTGTTGTCATTAGTCCACCTTACTCTTATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCCCATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACAACCCAGTTGATCCACCATCTATGCTTTATGCTTCCACATCCCACGTGTCGAACCAAAGGGAATCTTTTAGCAAGTCATCGGGAGATAGAAGGCCTAGTAGTGATGCTGAACGATGTAGCGAGTCTCACGATGTGGCCACAGAACTTGAACTTAAGATGCCTGGATCATCATCAACACAACAAGATTCCACTTCTGGAGGAAGGAAAGGCAAGCATTCAGTGGTAAGAGATAGAACCATCATAGGTGGGAGTGCTGGGAGTGCTTCAAGCCGTTATTCTTCTTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATTGA 999 0.4605 MDQPNPPLSSKPKLASESPLHRVTPTSNRFRSSQLLRERESKGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESHELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGPIPSPCSMYVPYSTPTNNPVDPPSMLYASTSHVSNQRESFSKSSGDRRPSSDAERCSESHDVATELELKMPGSSSTQQDSTSGGRKGKHSVVRDRTIIGGSAGSASSRYSSSQGLQDSSNSVGDIPKTD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1399 332 Gene3D - 51 129 IPR036638 GO:0046983
Vra11g1399 332 PANTHER TRANSCRIPTION FACTOR BHLH121 32 331 IPR044579 GO:0003700|GO:0055072
Vra11g1399 332 Coils Coil 93 148 - -
Vra11g1399 332 MobiDBLite consensus disorder prediction 33 87 - -
Vra11g1399 332 MobiDBLite consensus disorder prediction 1 87 - -
Vra11g1399 332 MobiDBLite consensus disorder prediction 303 332 - -
Vra11g1399 332 MobiDBLite consensus disorder prediction 244 268 - -
Vra11g1399 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 124 IPR036638 GO:0046983
Vra11g1399 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vra11g1399 332 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Vra11g1399 332 MobiDBLite consensus disorder prediction 272 288 - -
Vra11g1399 332 PANTHER TRANSCRIPTION FACTOR BHLH11 32 331 - -
Vra11g1399 332 SMART finulus 59 109 IPR011598 GO:0046983
Vra11g1399 332 MobiDBLite consensus disorder prediction 223 332 - -
Vra11g1399 332 CDD bHLH_AtILR3_like 58 132 - -
Vra11g1399 332 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1399 Vra-Chr11 16973343 16977606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1399 43 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.067 6.64e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g1399 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1399 - - gmx:100818281 435.647