Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1384 ATGATATTTGTCTTGGTGGGTTTGAGAGTAGAAGAAGCTAATGCTCAGTTTTTGAGAAAAGTTGGAAGAAAACAGTTACCTTACTGGTCAATATTGGTAGATCAATCAGGGCATGGAAACTTCACCACAATACAATCTGCCATTGATTCAGTTCCTTCTCAGAACATGTATTGGGTTTCCATCAAGGTCAAGGCTGGTACCTATAGAGAAAAAGTGAAGATTCCCTATGATAAGCCTTACATCATATTGAAAGGGGAGGGAAAGAGAAGAACTTTTGTTGAGTGGGATGACCATTATAATACCTCACAGAGTCCTACGTTTGTAGCCATGGCTGACAACGTTGTTGTCAAATCCATGAGCTTTAGGAATTCATACAACAATCCAATAAACAGTAAAGGCATTAAGCCTGCTGTGGCTGCTATGGTTAGTGGAGACAAGTCTTACTTTTTCAGAGTTGGTTTCTTCGGTTTGCAAGACACTTTATGGGACGACACAGGAAGACATTACTACAAGCTTTGCACCATTCAAGGTGCCATTGATTTTATCTTCGGTGCAGGCCAATCATTATTTGAGAGGTGTTCCATATCTGTGATTGGTGGAGCACTAGATCCTGGGCTACCAGGGTTCATCACAGCACAAGGGAGAACACATTCAGAAGATGAAAATGGCTTTGTTTTCATTCATTCTCATGTCTTTGGAAATGGAACAACTTACTTGGGGAGACCATGGAGAAGTCATGCTAGGGTTTTGTTTTACAAGACCAACTTCACCAACGTTGTACAACCTGCTGGTTGGGATGCTTGGAAATTTCATTCAAATAAGGGTGGCATAACATTTGCAGAGTATGGGAACTTTGGGCCTGGTTCTGACACTTCTCAAAGAGTGAGTTGGACAAAGAAGTTGGATTTAGAAACAATTGAAAATATGACAAGCACCAAGTTCATTGACACTGATGGCTGGCTTCAGAAACAACCATTCTAA 981 0.4088 MIFVLVGLRVEEANAQFLRKVGRKQLPYWSILVDQSGHGNFTTIQSAIDSVPSQNMYWVSIKVKAGTYREKVKIPYDKPYIILKGEGKRRTFVEWDDHYNTSQSPTFVAMADNVVVKSMSFRNSYNNPINSKGIKPAVAAMVSGDKSYFFRVGFFGLQDTLWDDTGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRTHSEDENGFVFIHSHVFGNGTTYLGRPWRSHARVLFYKTNFTNVVQPAGWDAWKFHSNKGGITFAEYGNFGPGSDTSQRVSWTKKLDLETIENMTSTKFIDTDGWLQKQPF* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1384 326 ProSitePatterns Pectinesterase signature 2. 175 184 IPR033131 -
Vra11g1384 326 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 325 - -
Vra11g1384 326 Gene3D - 29 326 IPR012334 -
Vra11g1384 326 PANTHER PECTINESTERASE 10-RELATED 13 325 - -
Vra11g1384 326 Pfam Pectinesterase 31 317 IPR000070 GO:0030599|GO:0042545
Vra11g1384 326 SUPERFAMILY Pectin lyase-like 30 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1384 Vra-Chr11 16825947 16829380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1384 30 269 Carbohydrate Esterase AT2G19150 46.473 1.19e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1384 - - gmx:100819252 535.413