Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1371 ATGTCAGGTGAAGAGGTAGCTGTTGCAGCTGAGGCACCTGCTTCCATTCCCGGTGAGCCCATGGACATCATGACTGCTTTACAGCTTGTGCTGAGAAAATCTCTGGCTTACGGTGGTCTTGCAAGAGGTCTTCATGAAAGTGCCAAGATCATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGACCAACCTGATTATGTGAAACTGGTGAAGGCCCTTTGCGCCGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCAGAGGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTCGTTAAGGATTTTGGCGAGCAACATGAAGCTTATAATGTTGTTCTGCAGCACGTGAAAGCTAACTGA 423 0.4775 MSGEEVAVAAEAPASIPGEPMDIMTALQLVLRKSLAYGGLARGLHESAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEQHEAYNVVLQHVKAN* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1371 140 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 119 IPR004038 -
Vra11g1371 140 Gene3D - 5 140 IPR029064 -
Vra11g1371 140 PANTHER 40S RIBOSOMAL PROTEIN S12 1 139 - -
Vra11g1371 140 PANTHER 40S RIBOSOMAL PROTEIN S12 1 139 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vra11g1371 140 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vra11g1371 140 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vra11g1371 140 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vra11g1371 140 PRINTS Ribosomal protein S12E family signature 110 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vra11g1371 140 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vra11g1371 140 SUPERFAMILY L30e-like 20 138 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1371 Vra-Chr11 16687898 16689809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1371 16 140 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.400 6.16e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1371 K02951 - gmx:100500093 269.24