Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1364 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAGGCATTTGAAAATGCGTTGGCAACTCATCCGGAGGATGCTTCAGATCGATGGGAGAAGATCGCAGCTGACGTGCCGGGGAAGACTATAGAGGAAATCAAACAGCATTATGAACTCTTGGTTGAAGATGTTAGCCAGATTGAATCTGGTTGTGTGCCTTTACCATCTTATAATTCTTCTTCAGAGGGCTCAACAAGCCATGCTAGTGATGAAGGGGCTGGCAAAAAGGGCAGCGGTCTTGGGAATTTTAACAGTGAGTCTAATCATGGGACTAAGGCTTCAAGATCAGATCAAGAAAGACGGAAGGGGATTGCTTGGACGGAGGATGAACACAGGTTATTTCTTCTGGGATTGGACAAGTATGGGAAAGGTGATTGGCGAAGCATATCAAGAAACTTTGTGGTGACAAGAACACCTACACAAGTTGCCAGCCATGCCCAAAAGTACTTTATTCGATTAAACTCCATGAACAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGCGTTAACAACGGTGACGTTTTAGCTCCACAAGGACCAATCACCGGTCAGACGAATGGTGCTGCAACCAATTCTACTTCCAAAGCAACCAAACAAGCCACCCCAGCCTCAACCGGAGTTGGAATATATGCTGCTCCTACCATTGGACAACCTGTAGGAGGACCCTTAGTATCTGCAGTTGGCACTCCAGTGAACCTTCCTTCACCTGCACACATGGCATACGGTGTCAGGGCTCCGGTTACCGGTGCAGTTGTACCTGGTGCACCGGTAAACGTGAGTCCTGTCACATATCCCATGCCACATACATCTGCTCCTCACAGGTGA 882 0.4762 MTVDEVDSSSEWSREQDKAFENALATHPEDASDRWEKIAADVPGKTIEEIKQHYELLVEDVSQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGSGLGNFNSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVLAPQGPITGQTNGAATNSTSKATKQATPASTGVGIYAAPTIGQPVGGPLVSAVGTPVNLPSPAHMAYGVRAPVTGAVVPGAPVNVSPVTYPMPHTSAPHR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1364 293 CDD SANT 11 58 IPR001005 -
Vra11g1364 293 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 280 - -
Vra11g1364 293 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Vra11g1364 293 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Vra11g1364 293 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Vra11g1364 293 SMART sant 8 60 IPR001005 -
Vra11g1364 293 SMART sant 119 169 IPR001005 -
Vra11g1364 293 PANTHER TRANSCRIPTION FACTOR KUA1 7 280 - -
Vra11g1364 293 MobiDBLite consensus disorder prediction 1 37 - -
Vra11g1364 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Vra11g1364 293 MobiDBLite consensus disorder prediction 8 37 - -
Vra11g1364 293 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Vra11g1364 293 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Vra11g1364 293 MobiDBLite consensus disorder prediction 68 119 - -
Vra11g1364 293 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Vra11g1364 293 MobiDBLite consensus disorder prediction 188 222 - -
Vra11g1364 293 CDD SANT 122 167 IPR001005 -
Vra11g1364 293 MobiDBLite consensus disorder prediction 68 85 - -
Vra11g1364 293 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Vra11g1364 293 Gene3D - 5 71 - -
Vra11g1364 293 Gene3D - 121 173 - -
Vra11g1364 293 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1364 Vra-Chr11 16611491 16622448 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g1364 Myb_DNA-binding 6.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1364 - - ccaj:109792793 534.258