Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1350 ATGATTCCCGTTCCTCAAGAAGAACCAAGCTTAGATTTCAGACCCTCTTTTGTTAACAATATCGTCACTGATTTTCTCTCCCATCTTTCCTCCATCCCAAATGCCTGCAACAGGATGTCCTTGCTCCAGGAATTTCTCACCAGATTGGAACTTGAATTGGTGAAGATCCAAGCGTTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAACGATGCTATTTCAGCTTTGAAGGAGGAGCTAGCGAAATGCAGAGCTTTAAAGTCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAGAGAGTATGAGGAGAAGGAGGATAGTGAGAAGGAAGAGGAATGCAGGGACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACAGAAGATGAAGCTTGTAATAGGAGCAAGGCATGTAGATTGGAACAGAAACAAAAGAAGAGTAAAGGAGAAGAAAGAAAATCTGTGGAAAAGGACTATTTCCGACATCATAGTAATAGAAATGTAGAGAGGGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGAGGAAGAATGTGTTATGGATGGACTTTCTCTTAAGACACCTGCAACTGCAGTCAAAAACACAAGGGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCCACTTCGCCCATGCTGCTGCCGCAAAGTGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGCTTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCAGCTACACCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGACGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCTGCAAATTCTAGTATCTCTGGTGCAGATCTTGGAGGTTTGTGGATGCACAAAGAATCAATGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACACAATCTGGGGAAACGACATCCACAACAGAAGGTGACAACATGATAGATGATGATATAAAATTAGAGGAGTTTCACATCTACTCAAGAACAACACATGATTACATAAAAGAGGATGGATCTTCGGAGAGAGGCTTTTGA 1143 0.4436 MIPVPQEEPSLDFRPSFVNNIVTDFLSHLSSIPNACNRMSLLQEFLTRLELELVKIQAFKRELPLCMFLLNDAISALKEELAKCRALKSEPVLEEFIPLKREYEEKEDSEKEEECRDKNDWVSSFQLWNTEDEACNRSKACRLEQKQKKSKGEERKSVEKDYFRHHSNRNVERGFVMPLSTYLATEEECVMDGLSLKTPATAVKNTREGRGSRISSCRVVSSATSPMLLPQSGRKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPAATAANSSISGADLGGLWMHKESMKGTSSCSPQGPLQFATQSGETTSTTEGDNMIDDDIKLEEFHIYSRTTHDYIKEDGSSERGF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1350 380 MobiDBLite consensus disorder prediction 319 347 - -
Vra11g1350 380 Gene3D - 234 292 - -
Vra11g1350 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 292 IPR017930 -
Vra11g1350 380 Coils Coil 70 90 - -
Vra11g1350 380 PANTHER TRANSCRIPTION FACTOR HHO6 8 361 - -
Vra11g1350 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 361 IPR044787 GO:0003700|GO:0006355
Vra11g1350 380 SUPERFAMILY Homeodomain-like 233 293 IPR009057 -
Vra11g1350 380 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 235 290 IPR006447 GO:0003677
Vra11g1350 380 MobiDBLite consensus disorder prediction 318 349 - -
Vra11g1350 380 Pfam Myb-like DNA-binding domain 237 288 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1350 Vra-Chr11 16484112 16487053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1350 8 317 G2-like Transcription Factor Family AT2G03500 39.104 4.51e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g1350 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1350 - - vra:106776390 741.495