Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1340 ATGGGAAGATTCATCCACATAGATTTACTTGTATCTGTGATGAGCAAACAATTACAACAACAAATAAATAAAAACTGGCAGTATCAATCAAAGACTCTAAGTTTGCAAAAAACAAATGAAAGACTGAAGAAGGCCTATGTTGCTTTTCAGGCATGGAAAAAGGCCATTCACTCCGACCCTTTGAACATCACCGGCAACTGGGTTGGTGAAGATGTTTGCTCTTACAATGGTGTGTATTGTGCTCCTGCCCTTGATGATCCTACCCTGAATGTGGTTGCTGGCATTGATCTGAACAATGCAGACATTGCTGGGAGCCTCCCAGAAGAATTGGGACACTTGCAAGATATTGCACTTTTCCACATTAACTCCAACAGATTCTGCGGTGTTATCCCAGAGAGCTTGCTGAATCTTACACTTGTGCATGAGTATGATATAAGCAACAATCGCTTTGTTGGTCGGTTTCCTTCTGTGGTCCTCACATGGCCGAACTTGAAGTACCTGGACCTCAGATTCAATGACTTTGAAGGACCCTTACCCCCAGAGCTTTTTGAGAAGGATCTTGATGCAATCTTTTTGAACAACAACCGTTTCTCATCCTTCATTCCAGACACCATAGGAAAATCCAACGCCTCGGTCATCACCTTTGCATACAACAATTTCAAAGGCTGCATTCCGAGCTCTTTCGGAAACATGAAGAACTTGAACGAGATTGTGTTCGTAGGAAACAGCCTCGGAGGATGCTTCCCACAGGATGTTGGAAAGATGGAAAACCTGACGGTTTTGGATTTAAGCGACAATGGGTTTGAAGGGACTCTTCCTAACTTGTCAGGACTGAAGAAGGTTGAGGTGATAGACATTTCGCACAACAAGCTCAGTGGATATGTGTCTAATACTGTGTGCCAACTTCCTTCGTTGAAGAACTTCACATTCTCTCACAACTACTTCAATGGAGAAGCTCAGAGTTGCGTGCCTTCACCCAATTCGTTGGTGGCTATGGATGACTCATACAATTGTTTGTCTGGAAGGAAGGATCAGAAGTCATCCAAGAAGTGCTTGCCAGTGATAACTCGCCCTGTGGATTGCAACAAGCACTGTGGAGGAGAAGGCAAAGAGAATGGCCATAGCCCTAGCCATAGCCATGCACCAAAGCCAACTCCATCTCCTAAACCTGAGACACCAAAGCTTGTACACTCTTCACCACCTCCTCCAGTTCACTCTCCTCCACCTCCCGTTTCCTCACCACCTCCACCGGTACACTCCCCAACACCTCCTCTCGTCTCCTCTCCACCTCCACCGGTACACTCCCCACCACCTCCTCCCGTCTCCTCTCCACCTCCACCGGTACACTCCCCACCACCTCCTCCCGTTTCCTCTCCACCTCCACCGGTACACTCCCCTCCACCTCCTCCTGTTCACTCACCACCACCTCCCGTTTTCTCACCACCTCCTCCTCCCGTCTCCTCTCCACCTCCACCTGTACACTCCCCACCACCAACTCCTGTTTTCTCATCACCTCCTCCTCCCGTCTCCTCTCCACCTCCACCAGTACACTCCCCACCACCACCTCCTGTTTTCTCACCACCTCCTCCAGTTCACTCCCCACCACCACCACCAGTCAACTCTCCACCTCCACCAGTTTATTCCCCACCACCACCACCAATTTCCTCCCCTCCACCTCCACCACCAGTTGCCTCCCCACCACCACCAGTTCACTCTCCTCCTCCACCAGTTTCCTCCCCACCACCACCGGTTTCCTCCCCACCACCGCCACCAATTTACTCCCCACCACCACCAGTGTACTCTCCTCCTCCACCAGTTTTCTCTCCCCCACCACCAGTTTCCTCTCCACCACCACCACCACCAGTGTACTCCCCACCACCGCCAGTGTACTCTCCTCCTCCACCAGTTTCCTCCCCACCACCACCAACACCAGTGTACTCACCACCACCACCACCAGTGTACTCTCCTCCTCCACCAGTTTACTCTCCTCCTCCTCCAGTCTCCTCACCACCACCACCACCATCAAAATGGGACGATGTTTTCCTTCCACCACACTATGGCTCCTCATACAGTTCACCTCCTCCACCAACAATTGCTGGATACAACTAA 2109 0.5064 MGRFIHIDLLVSVMSKQLQQQINKNWQYQSKTLSLQKTNERLKKAYVAFQAWKKAIHSDPLNITGNWVGEDVCSYNGVYCAPALDDPTLNVVAGIDLNNADIAGSLPEELGHLQDIALFHINSNRFCGVIPESLLNLTLVHEYDISNNRFVGRFPSVVLTWPNLKYLDLRFNDFEGPLPPELFEKDLDAIFLNNNRFSSFIPDTIGKSNASVITFAYNNFKGCIPSSFGNMKNLNEIVFVGNSLGGCFPQDVGKMENLTVLDLSDNGFEGTLPNLSGLKKVEVIDISHNKLSGYVSNTVCQLPSLKNFTFSHNYFNGEAQSCVPSPNSLVAMDDSYNCLSGRKDQKSSKKCLPVITRPVDCNKHCGGEGKENGHSPSHSHAPKPTPSPKPETPKLVHSSPPPPVHSPPPPVSSPPPPVHSPTPPLVSSPPPPVHSPPPPPVSSPPPPVHSPPPPPVSSPPPPVHSPPPPPVHSPPPPVFSPPPPPVSSPPPPVHSPPPTPVFSSPPPPVSSPPPPVHSPPPPPVFSPPPPVHSPPPPPVNSPPPPVYSPPPPPISSPPPPPPVASPPPPVHSPPPPVSSPPPPVSSPPPPPIYSPPPPVYSPPPPVFSPPPPVSSPPPPPPVYSPPPPVYSPPPPVSSPPPPTPVYSPPPPPVYSPPPPVYSPPPPVSSPPPPPSKWDDVFLPPHYGSSYSSPPPPTIAGYN* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1340 702 MobiDBLite consensus disorder prediction 660 679 - -
Vra11g1340 702 MobiDBLite consensus disorder prediction 629 648 - -
Vra11g1340 702 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 586 698 - -
Vra11g1340 702 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 520 590 - -
Vra11g1340 702 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 383 469 - -
Vra11g1340 702 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 395 - -
Vra11g1340 702 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 452 522 - -
Vra11g1340 702 SUPERFAMILY L domain-like 50 341 - -
Vra11g1340 702 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 32 395 - -
Vra11g1340 702 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 383 469 - -
Vra11g1340 702 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 452 522 - -
Vra11g1340 702 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 520 590 - -
Vra11g1340 702 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 586 698 - -
Vra11g1340 702 Gene3D Ribonuclease Inhibitor 210 353 IPR032675 -
Vra11g1340 702 PRINTS Proline rich extensin signature 380 392 - -
Vra11g1340 702 PRINTS Proline rich extensin signature 400 416 - -
Vra11g1340 702 PRINTS Proline rich extensin signature 421 433 - -
Vra11g1340 702 PRINTS Proline rich extensin signature 433 454 - -
Vra11g1340 702 MobiDBLite consensus disorder prediction 381 588 - -
Vra11g1340 702 Gene3D Ribonuclease Inhibitor 45 209 IPR032675 -
Vra11g1340 702 MobiDBLite consensus disorder prediction 366 588 - -
Vra11g1340 702 MobiDBLite consensus disorder prediction 660 702 - -
Vra11g1340 702 ProSiteProfiles Leucine-rich repeat profile. 257 279 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1340 Vra-Chr11 16347649 16351507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1340 14 363 Trihelix Transcription Factor Family AT1G49490 63.305 4.82e-169 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1340 - - gsj:114419228 586.645