Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1338 ATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCACCACTCTTCAATCCAGACAACTGAGGATTCCAGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACTCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTCCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCGGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACATCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGAAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGCTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAATGAGGAAGCAGTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAGGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTACTTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGCCCAATGGCAGACAGTGGTCGGTTCGCTGTCTGTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAACAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCGCGTAACTGAAGATGCAAACTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAGCATCGCGTTAGCAGTACAGTGAAATTGATTAGAAATTAG 1305 0.4245 MARPCFHKLVLSTTLQSRQLRIPDIFLRKYGTQLSTVATLTVPDGSIWRIGLKKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPSYLTSGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSQGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEAVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLPNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRVTEDANLLNSPPVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1338 434 CDD B3_DNA 296 391 IPR003340 GO:0003677
Vra11g1338 434 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Vra11g1338 434 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677
Vra11g1338 434 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Vra11g1338 434 PANTHER B3 DOMAIN-CONTAINING 1 423 - -
Vra11g1338 434 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Vra11g1338 434 MobiDBLite consensus disorder prediction 155 205 - -
Vra11g1338 434 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Vra11g1338 434 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Vra11g1338 434 MobiDBLite consensus disorder prediction 233 250 - -
Vra11g1338 434 Gene3D - 1 99 IPR015300 -
Vra11g1338 434 MobiDBLite consensus disorder prediction 233 260 - -
Vra11g1338 434 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 423 - -
Vra11g1338 434 Gene3D - 275 395 IPR015300 -
Vra11g1338 434 SMART B3_2 6 98 IPR003340 GO:0003677
Vra11g1338 434 SMART B3_2 298 393 IPR003340 GO:0003677
Vra11g1338 434 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1338 Vra-Chr11 16320465 16325731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1338 1 394 B3 DNA Binding Superfamily AT3G18990 50.995 6.71e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra11g1338 B3 7.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1338 - - gmx:100789352 742.651