Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1316 ATGGAAAAGGTGGCTGCGCCTCCGATTCTGATGCAGCGGAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGAGTCCGAGCGAGAGCTGGAAGTGGGAGTGGGACAGCGTGCGGTTTGCGGGGAAGCCTCCGAGCGACGACGTCGTGTTCGAGGAGGAGAGCGTTGCGGCGGTTGCTCCTCTCCAGCTCAACCTCGCGGGGAGGGTGAGCGGCGGTGGTAACAAGAGAGTGCGCTCGGGGTCGCCCGGAACGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACAGGAGGCACAAGGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTTAGCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGATGAGGGGAAACGGAGTTGCCGCCGTAGACTCGCTGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTACTTCCGCCACGCAGGTCCCCGCCGCCGCCGTCGCAGCAGCAGCAAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCGCAGGGAAAATTTGAAGAAAGATCACAAGTTCCGGACAGAGAGCAGCTTGTTCAGATTCTCAACAGGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCGGGATGCTGGTAATGTCAACGGGAAAAAGGATCATGTACAATCGGAGACACCATCCTCCTATCACCATCATGACCAACTGAACCACACCCCAGCTACCCCATTAACTATGGACTTACTTGCTGTTCTTTCCACGAGTCTGTCTGGGTCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATCGAAGCTGCAGCAGTGATGGCGGTAGTGTTAAATCTAGGAGTAGTGCTGATCAGACGAGACAACAGCACTTCTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTTGCATCTTCAAGAAAGTATTTCTCGTCTGACAGTAGCAACCCTGCAGAAGAGAGGTCACCATCGTCTTCTCCTCCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTACAGGTCTAAAGCCGGAGAGCATCTCTTCTGGAAGAGGAGTTAATTCAAACAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAAAAGGATCCAACAACCTAGTTGGCTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCAAGCCATTTCCCAGAAACATTGCGAGCACAGATTTACAGTTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAGTGGAAGGTTTCTAGTACATTCTGGCAGTCAATTGGCTTCACACAAAGATGGGAAGGTACGCATATGCAAACCATGGAGAACGTGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTAGACAGGAAACCTCTATTTCATTGAAGGGCAGAAACCTGTCAACTCCTGGCACAAAGATCCACTGTACGGGTACTGGCTCTTACTCATCAGCGGAAGTCATCAGATCTTCATATCCTGGTGTGGTGTATGATAATATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCTGGTGTTGTGGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCCAATGAGACCATTTGCAACGAATTGAGATTACTTGAGTCTGAATTTAATGAGGAGGAAAAAATATGCGATGCCATTTCAGAAGAGCATGAACATAATTTTGGAAGGCCGAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTCTCATATATGCATGAGGTTCCATGTTATTCGCTTGACAGGTTCAAATTTGTTCTCACATTTGCTGTGGAAAGAAACTGTTGTATGTTAGTCAAAACCCTTCTCGATGTACTGGTTGATAAACACTTGCAAGGGGAGTCGTTGTCAACAGGGTCAGTGGAAATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGAACATAGGCATGGTTGATTTGCTCATTCACTATTCTTTACCGAACAAAAATAGTACATCCAGCAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATTACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGGGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCTAACGGGCAGACTCCACATGCGTATGCTATGATGAGGAATAATAACTCCTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACGAAGGGCTGAAATTTCAGTAACAATTGAGAATGAGGTAGAGCAAGCCTCTCTGAGGGTAGAGCTTAACCAAAAGCAAAGTAACCTACTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCGACTGCAGAAATTCGCTACAACAGAAGATTTTCAGGTTCACACGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTTTGTGTTTGTGTGTTCTTCCGTGGACGCCCTTGCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAACCCTGGATTTTGGCACAATGTAA 3039 0.4732 MEKVAAPPILMQRKRDLSYGVVAGSPSESWKWEWDSVRFAGKPPSDDVVFEEESVAAVAPLQLNLAGRVSGGGNKRVRSGSPGTATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLSNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATQVPAAAVAAAANLEIFNLLTAIAGASQGKFEERSQVPDREQLVQILNRIPLPADLATKLRDAGNVNGKKDHVQSETPSSYHHHDQLNHTPATPLTMDLLAVLSTSLSGSGPDANASPSQNRSCSSDGGSVKSRSSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGATGLKPESISSGRGVNSNKEASQSHSCNISLDLFKGSNKRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPETLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRSGRFLVHSGSQLASHKDGKVRICKPWRTWKSPELISVSPLAIVSRQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIRSSYPGVVYDNIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIANETICNELRLLESEFNEEEKICDAISEEHEHNFGRPRSREEALHFLNELGWLFQRERFSYMHEVPCYSLDRFKFVLTFAVERNCCMLVKTLLDVLVDKHLQGESLSTGSVEMLNAIQLLNRAVKRKNIGMVDLLIHYSLPNKNSTSSKYVFPPNLEGPAGITPLHLAACTSGSEGVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNNSYNVLVARKLADRRRAEISVTIENEVEQASLRVELNQKQSNLLKRGQSSCAKCATAEIRYNRRFSGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPCVGSVAPFSWETLDFGTM* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1316 1012 MobiDBLite consensus disorder prediction 346 382 - -
Vra11g1316 1012 MobiDBLite consensus disorder prediction 237 263 - -
Vra11g1316 1012 MobiDBLite consensus disorder prediction 280 335 - -
Vra11g1316 1012 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Vra11g1316 1012 MobiDBLite consensus disorder prediction 411 425 - -
Vra11g1316 1012 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Vra11g1316 1012 MobiDBLite consensus disorder prediction 280 425 - -
Vra11g1316 1012 MobiDBLite consensus disorder prediction 237 255 - -
Vra11g1316 1012 Gene3D - 756 947 IPR036770 -
Vra11g1316 1012 Coils Coil 692 712 - -
Vra11g1316 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 1012 IPR044817 GO:0003677
Vra11g1316 1012 SUPERFAMILY Ankyrin repeat 759 905 IPR036770 -
Vra11g1316 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 30 1012 - -
Vra11g1316 1012 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Vra11g1316 1012 MobiDBLite consensus disorder prediction 153 174 - -
Vra11g1316 1012 Pfam SBP domain 90 163 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1316 Vra-Chr11 16141946 16147883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1316 3 1012 SBP-box Gene Family AT1G20980 52.592 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra11g1316 SBP 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1316 - - gmx:100819004 1659.43