Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1310 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTGAGACAGTACATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAACTGCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGAGGTCATCACAAGGCTACTCCTAAACTTGTTCTTCAATTGATGGATGTTAAAGGGCTGACAATTTCACATGTCAAGAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGATTCCTGCAGACAAGACAAGACTTCCACCCAACATAGAAAACAACACGATGATGAAGTGGGTGATGTTGGTTTCCACTCTTGTTTCAAATCCATTGGAAAAGAATCTGATTCCCAACCCAGCTGCAGTAATTTCTCCCTTAAAAGAGCTAGAATCGAGAAGACAAGTTTTCTCTCAGGATTCCCACAATGCAGCCAAAGAATATGTGATGCAGTCCCAAATCCATACACTACTTTTTATGATTACCTGCATAGCATGGCTGAGCAGAAGGGAATAAAGAAGATTTGTGCTGGTTCAATATTGCAGACTCAACCCCTTTCCACAACTTTTCTTCCCATGCTACCAAGCCAAGCATCAGATTTTCTCCAGGTTGCCTACTTAAATGATAAACAGGCTTTGAATGAAGTTGAGAAGAGTTGTAGGGTAGAAGCAGAGGATGAAGACATGGGAGGTTGTGAGTTGTCACTGTCCATCTCATTGCCACAACCACATCCTTCTTCTCAGAGAAGTAATGCTTCTTCAGTCAGCGATATCAGTGAGGCCTTTTCATTGTGCCCTAAGTTTAACAACAACAACAACAACTACATGGGATGTTCTACTTCTTCTAATGTTTCAAACAAAGTTAATGTCGACCTATCTTTGGCCATTTGA 876 0.4167 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQDKTSTQHRKQHDDEVGDVGFHSCFKSIGKESDSQPSCSNFSLKRARIEKTSFLSGFPQCSQRICDAVPNPYTTFYDYLHSMAEQKGIKKICAGSILQTQPLSTTFLPMLPSQASDFLQVAYLNDKQALNEVEKSCRVEAEDEDMGGCELSLSISLPQPHPSSQRSNASSVSDISEAFSLCPKFNNNNNNYMGCSTSSNVSNKVNVDLSLAI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1310 291 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Vra11g1310 291 Gene3D - 18 74 - -
Vra11g1310 291 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Vra11g1310 291 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Vra11g1310 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 190 291 IPR044848 GO:0003700
Vra11g1310 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 164 IPR044848 GO:0003700
Vra11g1310 291 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 164 - -
Vra11g1310 291 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 190 291 - -
Vra11g1310 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1310 Vra-Chr11 16109131 16113812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1310 1 74 G2-like Transcription Factor Family AT1G14600 70.886 1.20e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g1310 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1310 - - pvu:PHAVU_003G008400g 529.635