Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1309 ATGGCAGCACCTTTTTCTTCAGCATCTCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACCACAACACCATCATCCTCATCAACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTATCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGTTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCTTTGGCACAAGAAAGTGCAAGAGAGCCACCTACTTTGAGCAGTGCCATTGGCAACCAACTATTTGGAAACAGTAACAACATGTCCTTAGGCTTATCTCAGAATTTGGGTTCTCAGATCCCTTCAATCCATGACCAAAACTCTCAACCCAGTGACCTATTGCGTTTTTGTGGTGCACCAAGGACTGGTCCATTTGACCACATTCTCCCACCAAACATGGCCTCACCCTTCAGACCCTCCTCACACCAAATCATGCAACTTCAAAACCCTCCATTCTTCATGCCAGAATCAAACCAAAACTACCATGACCACCAACAAGGTTTAATCTCAAACAAGCCTTTTCAAGGAATGATACAACTATCTGACCTCAACAACAGCAACACCCCTTCTGCCTCCAACCTCTTCAATCTTCCTTTTCTATCCAACCGAGGCCACACCCCCAACTACTCCGAGGAACACCACTTCAACCCCACAGAAGGCTCTAATTTCTTCACAGAAGGCACCATAATCGGCACCGATCACCAAACAAGCTCCGCCACTGCCCCTTCGGTTTTCAGCACCTCTCTCCAAAACACCACCAACATGTCTCACATGTCAGCAACTGCACTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGCACCAACAACAGTGCCTCCTCTCTTCTAAGAAGCTTAGCATCCAAATCTGATCACAGGCCACTCCTCAGTGCTGCAAACTACAGCAACATCTTGAACTCCAGCGTGCAAGAGATGATGAACCTTCCCGGCTTCGAAGCATATGATCATGGCATCACCAACAAGGAACCAAAACTCAGCGTTGGAGGCTCTGATAGGCTCACCCGAGATTTTCTAGGAGTTGCACAGCAACAACAACAGCAACGTGGGTTTAACTTGAGCTCTTTGGAAGCAGAGACAAACAATGCGGCGCCGTCAGGTCAATCTTTCGGAGGTGGAGCAAACTTTCAGTGA 1572 0.4701 MAAPFSSASLFGIREEDQNQMKQQHSSTTTPSSSSTPAAPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPTLSSAIGNQLFGNSNNMSLGLSQNLGSQIPSIHDQNSQPSDLLRFCGAPRTGPFDHILPPNMASPFRPSSHQIMQLQNPPFFMPESNQNYHDHQQGLISNKPFQGMIQLSDLNNSNTPSASNLFNLPFLSNRGHTPNYSEEHHFNPTEGSNFFTEGTIIGTDHQTSSATAPSVFSTSLQNTTNMSHMSATALLQKAAQMGAASSSTNNSASSLLRSLASKSDHRPLLSAANYSNILNSSVQEMMNLPGFEAYDHGITNKEPKLSVGGSDRLTRDFLGVAQQQQQQRGFNLSSLEAETNNAAPSGQSFGGGANFQ* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1309 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 448 - -
Vra11g1309 523 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Vra11g1309 523 SMART c2h2final6 114 144 IPR013087 -
Vra11g1309 523 SMART c2h2final6 149 169 IPR013087 -
Vra11g1309 523 SMART c2h2final6 73 95 IPR013087 -
Vra11g1309 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Vra11g1309 523 MobiDBLite consensus disorder prediction 12 34 - -
Vra11g1309 523 MobiDBLite consensus disorder prediction 1 58 - -
Vra11g1309 523 Gene3D Classic Zinc Finger 52 121 - -
Vra11g1309 523 Gene3D Classic Zinc Finger 127 206 - -
Vra11g1309 523 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Vra11g1309 523 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 448 - -
Vra11g1309 523 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1309 Vra-Chr11 16070380 16077736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1309 10 496 IDZ Gene Family AT2G02070 46.797 2.81e-131 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g1309 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1309 K25870 - gmx:100818072 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1309 11 16070380 16077736 Vra11g1309 11 16070380 16077736 ECH