Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1308 ATGACTTCTGGTTCCTCATCCACACCCTTTTTGGGAGTCAGACAACAAAATCAAACTCAGCTTTCACAACAGCACCAATCCTCCACAGCTGCTTCCTCATCTACTACTACTACTACTTCTACTACTACCACTCCATCCACAATGCCTCAGAAGAAAAGAAGGAATCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTGGGAGCTCATCATCTGTATGGCACAAACCACATGAGCCTAGGCCTTGGTGCCCAACTGCAGAACCAAGCAGCCTCTGCTAACAGCTTATTGAGCCTTGGAACTGCACAAAAGTTTGAGCACTTAATCTCTCCTAATCTGCACCACTCATCTTCATTTGGAGTGCAGTCACCACCCCATTCATCATTCTTCATGACTGACCCAAACCAAGCATTTCAAGACCTTCAGTCTCACCAACAAGGACCCTTATTCTCAACCAAGCAACTCCACGGTCTTATGCAACTCCCTGATCTTCAAGGAACCACCAACAACAACTCCACCTCTGCCTCATCACTGTCTGCTTCAGCTAACAACGCCAATCTCTTCAACCTCAGCTTCTTTCCTAATACCAATACCAGTGGCAGCATAATCAACGACCAATTCAGCAACATAAGTGGAGGCAATGACCAAGGAACAACAACATTCTATAGTTCTAGTAGCCCTGTAAGTAACCAAGTCGGTTCAGGCTTGTCTTCACTCTTTGGTAATTCGTCTTTGCAACAAGATAGCATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCAGCTCAAATGGGTTCAACCACCACCACCAATGGTCCCTGCTCTCTTCTGAGAGGAACGGAAGAATTAGGTATAAGGTCAAGGATGGAGAGTGAGCACAGTAACCATCTGCGCGGATTGATGAACTCCTTTGCCAATGGAAACGCTTCCATGTTTGGCAACGTCAAAGGGAATGAAAACAACCTTGGCCAGTTTCACAGCGTTTCGGAGGAGCCTAAGAAGATGTCACAAAACCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGGGTTGGAGGAATGGTCAGAAACATGAACAGTGGTGGATTTTCACAACGTGAGCAACAACACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAAGGAAACCAACACTTCGGAGCCTCAACACTCTAA 1674 0.4606 MTSGSSSTPFLGVRQQNQTQLSQQHQSSTAASSSTTTTTSTTTTPSTMPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGAHHLYGTNHMSLGLGAQLQNQAASANSLLSLGTAQKFEHLISPNLHHSSSFGVQSPPHSSFFMTDPNQAFQDLQSHQQGPLFSTKQLHGLMQLPDLQGTTNNNSTSASSLSASANNANLFNLSFFPNTNTSGSIINDQFSNISGGNDQGTTTFYSSSSPVSNQVGSGLSSLFGNSSLQQDSMSPHMSATALLQKAAQMGSTTTTNGPCSLLRGTEELGIRSRMESEHSNHLRGLMNSFANGNASMFGNVKGNENNLGQFHSVSEEPKKMSQNLGLCFGGSDKLTLDFLGVGGMVRNMNSGGFSQREQQHSMGTMSPLDPKLESAQGNQHFGASTL* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1308 557 Gene3D Classic Zinc Finger 63 128 - -
Vra11g1308 557 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Vra11g1308 557 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 529 - -
Vra11g1308 557 MobiDBLite consensus disorder prediction 520 557 - -
Vra11g1308 557 MobiDBLite consensus disorder prediction 1 64 - -
Vra11g1308 557 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Vra11g1308 557 MobiDBLite consensus disorder prediction 1 54 - -
Vra11g1308 557 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Vra11g1308 557 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Vra11g1308 557 Gene3D Classic Zinc Finger 134 213 - -
Vra11g1308 557 SMART c2h2final6 121 151 IPR013087 -
Vra11g1308 557 SMART c2h2final6 80 102 IPR013087 -
Vra11g1308 557 SMART c2h2final6 156 176 IPR013087 -
Vra11g1308 557 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1308 Vra-Chr11 16057933 16062886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1308 10 228 IDZ Gene Family AT2G02070 77.727 1.59e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g1308 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1308 K25870 - gmx:100806198 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1308 11 16057933 16062886 Vra11g1308 11 16057933 16062886 ECH