Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1307 ATGAAACCCGACTTGTACGAAATCTCCGACGACGAATGGGAGAATCACTCCTTCAAACCTTCGCGCGTCCTCAAACGACCTCGCACTTCATCCCCTCCTTCCCCGCCACCTATCGAGTCCTTCGCTTACACCTCTAAGGTCGACGTTTTAAGCGAAAACGACAGCGATTGCGTCGAAATCGCCCCGAGCGACGCCAATTTCCTCGACGACCTCGAGGACGCCGACGTGGACGCTTCCGGCGGCGGTTATGCGGCGGCCTCGCGAGGCCGGAGGTTCATCATCGATGACGAAGACGAAGACGCTGAGGAGAACGGTGGAAGAGACGGACGCGTGTCGGAATTGTACGAGGTGGAAGAAGAAGAAGTTGAAGAGTTGAACGAAAACGATGTCGTCGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTCGGCTCGACTGGGACCGCGTGCGAGAGGTATTCGGAGGCGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTGCTAAAGCCGTATCAGCTGGTTGGTGTCAACTTTTTGCTTCTGCTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCGGATGAAATGGGTCTCGGCAAAACAGTTCAGGCCATCACATATTTAACTCTGTTGAAACGCTTGCACAATGATTCTGGTCCACATCTTATAGTCTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGATGGTGTCCGTACTTTTCTGTTCTTCAATATCATGGTGCTGGACGTGCAGCGTACTGCAAGGAGTTGAACTCTTTGTCCAAAGCAGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTACGAGCGTCACAGTGCACAGCAGAAAGATGATCGGAAAATTCTGAAGCGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGTTTGATGTTGACTGGGACACCACTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGACGTTGACCTAAAAAAGTTATTAAATGCAGAAGATAGAGATTTAATTGGTCGGATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGACTGAAATCTGACGTGATGCAACAACTTGTTCCAAAAATACAGCAAGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCAGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAATTTACTAGCAGTGCTTCCCCGGCGACAGATAAATAACTATTTCGTTCAGTTCCGCAAGATAGCAAATCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATCCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAATTACAACGACTTTTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAAAAAGGGGATCCTTTCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGGAGAACTTCTTCCTTCACTAAAGAAGGATGGCCATCGGGTCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATATTGGAGTGGAGTTTGGATGTCATTGGATTGACCTATAGACGGCTAGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGTCAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTAGTGACCAAGGGAACAGTAGATGAAAATGTGTATGAGATTGCAAAAAGAAAGCTAGTATTAGATGCTGCCGTTCTGGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTGTCTGCTATTTTATTGAGTTAA 2223 0.453 MKPDLYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVLSENDSDCVEIAPSDANFLDDLEDADVDASGGGYAAASRGRRFIIDDEDEDAEENGGRDGRVSELYEVEEEEVEELNENDVVGRALHKCARISAELKGELFGSTGTACERYSEAESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWERELKRWCPYFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLYERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKCSELNSKNLLAVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDKKGILSDKHVMLSAKCRALGELLPSLKKDGHRVLIFSQWTSMLDILEWSLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1307 740 Pfam SNF2-related domain 211 497 IPR000330 GO:0005524|GO:0140658
Vra11g1307 740 Gene3D - 428 737 IPR027417 -
Vra11g1307 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 721 IPR027417 -
Vra11g1307 740 SMART helicmild6 596 679 IPR001650 -
Vra11g1307 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 382 IPR014001 -
Vra11g1307 740 Pfam Helicase conserved C-terminal domain 567 679 IPR001650 -
Vra11g1307 740 MobiDBLite consensus disorder prediction 17 39 - -
Vra11g1307 740 CDD DEXHc_Snf 191 384 - -
Vra11g1307 740 PANTHER SNF2/RAD54 HELICASE FAMILY 77 738 - -
Vra11g1307 740 CDD SF2_C_SNF 557 690 - -
Vra11g1307 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 737 IPR001650 -
Vra11g1307 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 417 IPR027417 -
Vra11g1307 740 Gene3D - 160 405 IPR038718 -
Vra11g1307 740 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 77 738 - -
Vra11g1307 740 SMART ultradead3 187 392 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1307 Vra-Chr11 16025044 16036649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1307 212 718 RAD5 or RAD16-like Gene Family AT5G22750 26.677 7.51e-45 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra11g1307 SNF2_N 7.9e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1307 K14439 - gmx:100806323 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1307 11 16025044 16036649 Vra11g1307 11 16025044 16036649 ECH