Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1306 ATGGGGAGGATCAAACCTCATGTTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTGGCATAAGTGCCACAACTATTATAGTCTGTACATTGATTATTGTCATGCTTATGCATTTCATGTTTTATAGACACTGGTCCAACAGGAGAAGACTTCAACCAGAGAGCTACATTTCAGTCTCTGAGGATGAAAATACGCTTGCGGAGTCCAAAAAGTCTGATCTACCTGGATATGCGATTGTAATTACCTCTAAAGGCTCTATCATAGTAGAACTTTATAAGGAAAGTGCCCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAACACTATGTAATTCAGGCTGGTCATAACAAAGGGCCCGGAGCTACTGAAGATTGGAACTTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACTTCGAAGGGTAATTACTTCAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAGTGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGAGAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTAAAGAGATGGTGTGA 687 0.3916 MGRIKPHVLLQQSKRKKGPSGISATTIIVCTLIIVMLMHFMFYRHWSNRRRLQPESYISVSEDENTLAESKKSDLPGYAIVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNKGPGATEDWNLLGKKYASMRHEAFMLGTSKGNYFNKGFDLFITTAPIPDLSEKLIVFGRVIKGEDIVQEIEEVDTDEHYQPKISIGILDVALKEMV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1306 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 228 - -
Vra11g1306 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 228 - -
Vra11g1306 228 CDD cyclophilin 83 221 - -
Vra11g1306 228 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 81 222 IPR002130 GO:0000413|GO:0003755
Vra11g1306 228 Gene3D - 63 227 IPR029000 -
Vra11g1306 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Vra11g1306 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Vra11g1306 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 171 183 IPR002130 GO:0000413|GO:0003755
Vra11g1306 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 199 IPR002130 GO:0000413|GO:0003755
Vra11g1306 228 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 86 224 IPR002130 GO:0000413|GO:0003755
Vra11g1306 228 SUPERFAMILY Cyclophilin-like 76 223 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1306 Vra-Chr11 16019545 16024281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1306 43 224 U-box Gene Family AT5G67530 23.810 8.32e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1306 - - gmx:100796043 409.068