Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1296 ATGGCTAAAAACGACTTGAAGCTTTTGGGTAGTTGGTCCAGCCCTTTTGCTCTAAGGGTGCAGATTGCCCATGACCTGAAGGGTGTAGATTATGAGGTTATTGAAGAGACCTTGAATCCCAAAAGTGAACTTCTTCTTAAGTCCAATCCTGTGCACAAGAAAATCCCAGTTCTCCTTCATGCAGATAAACCCATATGTGAATCTGCAATCATAGTTGAATACATCGATGAAGTTTGGACCCATGCTCCCTCCATCCTTCCACAAAATGCCTATGATCGAGGTCATGCCAGATTTTGGGTTGCTTACATCGATGACAAGTGGTTGAAGGCCTTAAGAAGTATTCTAATGGCTGAAGAGAATGATGAAGCAAAGGAGGCACAGTTTAAGGAAGCAGAAGAAGCGTTTGAGAGGATGGAAGAAGTGATGAACAAGGGCAGTGAAGGAAAGGCCTTTTTCGGAGGAGACACCATTGGATTCATTGATATTGGTTTTGGAAGCTATCTGAGTTGGATCAGAGTGATGGAGAAGATGAATGCAAGAAAATTGATTGATGAAACCAAGCACCCTGGCTTGATCCGATGGACTGAAAATTTTGCTGCTCATCCTGCTGTCAATGGCCTTATACCAGACACTGACAAGCTTCTTGAAGTTGCCAAGGGTTATAAGGAATGGGCTCGTGCAGCTGCAAACTAA 693 0.4358 MAKNDLKLLGSWSSPFALRVQIAHDLKGVDYEVIEETLNPKSELLLKSNPVHKKIPVLLHADKPICESAIIVEYIDEVWTHAPSILPQNAYDRGHARFWVAYIDDKWLKALRSILMAEENDEAKEAQFKEAEEAFERMEEVMNKGSEGKAFFGGDTIGFIDIGFGSYLSWIRVMEKMNARKLIDETKHPGLIRWTENFAAHPAVNGLIPDTDKLLEVAKGYKEWARAAAN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1296 230 SUPERFAMILY GST C-terminal domain-like 77 223 IPR036282 -
Vra11g1296 230 Coils Coil 114 144 - -
Vra11g1296 230 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Vra11g1296 230 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Vra11g1296 230 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Vra11g1296 230 SFLD Main.3: Omega- and Tau-like 2 227 IPR045073 -
Vra11g1296 230 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 221 IPR010987 -
Vra11g1296 230 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 219 IPR045073 -
Vra11g1296 230 PANTHER GLUTATHIONE S-TRANSFERASE U17 5 219 - -
Vra11g1296 230 CDD GST_N_Tau 6 79 - -
Vra11g1296 230 Gene3D - 86 229 - -
Vra11g1296 230 CDD GST_C_Tau 90 221 IPR045074 GO:0004364|GO:0006749
Vra11g1296 230 SFLD Main (cytGST) 2 227 - -
Vra11g1296 230 Pfam Glutathione S-transferase, C-terminal domain 112 202 IPR004046 -
Vra11g1296 230 Gene3D Glutaredoxin 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1296 Vra-Chr11 15886721 15887912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1296 1 219 Glutathione S-transferase Gene Family AT1G10360 53.636 2.20e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1296 K00799 - gmx:100808374 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1296 11 15886721 15887912 Vra11g1296 11 15886721 15887912 ECH
Vra11g1296 11 15886721 15887912 Vra7g0612 7 11374987 11376082 PCT