Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1272 ATGAGTCGCAAGCGAGACAGGCACTATTTTTCCCGCCACGACGCCGCCTCCAAGCGCCGCCGCCCCTTGCCAGAGCCCGTGGAGGAGGAGAGGCCGGCGACGAGGCCGGCGCTGCCTTCCGCAGTGGTCGTGATGGGCCTTCCTCAAGACTGCTCCGTCCTCGATCTCAAGTCTCGCTTTGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATTACCTACCGGTCAAAGGAATCTGCCGACGCCGCCATCGCCGCCGGTGTTGACCCCTCCTTCGGAATCACCGTTAGCTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAAGGATAAAGGGCATATGTCAAAACTTGTTCGTGCTGAGGCACCTTTGAGCAAGCGTGGAAGAGGTAATAGACTTGCTTCAGCTATAGGGAACCCCAAACATGGTGAAAATAGCTCCCGTAGCCCAATTTTAGAAGCGCCTTTCAAGGGCCGAGAAATTGTTGCTTATGATGATATCCTCTAA 564 0.5638 MSRKRDRHYFSRHDAASKRRRPLPEPVEEERPATRPALPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKESADAAIAAGVDPSFGITVSSKKVQVLWATDPLAMWREGVGNSKDKGHMSKLVRAEAPLSKRGRGNRLASAIGNPKHGENSSRSPILEAPFKGREIVAYDDIL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1272 187 CDD RRM_SF 42 93 - -
Vra11g1272 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 92 IPR000504 GO:0003723
Vra11g1272 187 MobiDBLite consensus disorder prediction 145 169 - -
Vra11g1272 187 SMART rrm1_1 41 111 IPR000504 GO:0003723
Vra11g1272 187 MobiDBLite consensus disorder prediction 7 32 - -
Vra11g1272 187 Gene3D - 1 117 IPR012677 -
Vra11g1272 187 SUPERFAMILY RNA-binding domain, RBD 26 119 IPR035979 GO:0003676
Vra11g1272 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 115 IPR000504 GO:0003723
Vra11g1272 187 MobiDBLite consensus disorder prediction 1 34 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1272 1 187 Homeobox Transcription Factor Family AT1G27050 51.707 4.02e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1272 - - ccaj:109806897 303.138