Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1271 ATGGCGGGTGGCAAGCTTCATGCTGCTTCAACCATGTCGCTTCTCCTCCAAAACGAAAGACTCCCTTGCTCCTCTGAAGTCCTTGAATCTCTTTGGGCTCACACCTCTAACCCTGCTTCCTTCCAAGGTTCAAAATCTATGGTTGATTTTGAGAATGTTAGTGGCGGCAGGGTGACGGACAGGCCGTTTTTTCAAGCGTTGGAGAAGGAAGAGAACTGTGATGATGATTATGAGGGGTGCTTCCATCAACCGGGTAAGAAAAGGAGACTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTGGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACGAAGCAGCTAGAAAAAGATTATGGCACATTGAAAGCTAGTTATGACAGACTGAAAGGTGACTATGAAAGTCTTGTTGAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGAATTCGGACGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAACATCTGAAAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCCTCTTCATTCGTGGAGCCTGCTGATTCCTCCCATGCTTTTGAACCAGACCACTCAGACTTTTCTCAAGATGAAGAGGATAACCTCAGTGAAAGCCTTTTGACCCTCCCTTGCTTACCAAAGGTTGAAGAAGCCTGCTATGATGACCCTCCTCAAACCCTTGTAATTTTGGTTTCCATGTTGAGGATCAAACCTTCTGTTTCTGGCCCTATTGAACCCACCAACCACTTCCAATGTTATAAAACTTCGCACTTGTAA 1026 0.4483 MAGGKLHAASTMSLLLQNERLPCSSEVLESLWAHTSNPASFQGSKSMVDFENVSGGRVTDRPFFQALEKEENCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVEENDKLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNLSESLLTLPCLPKVEEACYDDPPQTLVILVSMLRIKPSVSGPIEPTNHFQCYKTSHL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1271 341 MobiDBLite consensus disorder prediction 183 220 - -
Vra11g1271 341 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Vra11g1271 341 SMART HOX_1 83 145 IPR001356 GO:0003677
Vra11g1271 341 Coils Coil 154 181 - -
Vra11g1271 341 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Vra11g1271 341 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 308 - -
Vra11g1271 341 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 308 IPR045224 GO:0003700
Vra11g1271 341 MobiDBLite consensus disorder prediction 267 281 - -
Vra11g1271 341 Gene3D - 136 184 - -
Vra11g1271 341 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Vra11g1271 341 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Vra11g1271 341 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Vra11g1271 341 MobiDBLite consensus disorder prediction 183 201 - -
Vra11g1271 341 CDD homeodomain 84 142 IPR001356 GO:0003677
Vra11g1271 341 MobiDBLite consensus disorder prediction 238 285 - -
Vra11g1271 341 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Vra11g1271 341 Gene3D - 89 135 - -
Vra11g1271 341 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1271 Vra-Chr11 15343864 15345921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1271 43 274 Homeobox Transcription Factor Family AT3G01470 43.162 5.93e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra11g1271 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1271 - K09338 gmx:547565 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1271 11 15343864 15345921 Vra11g1271 11 15343864 15345921 ECH
Vra7g0622 7 11711289 11714814 Vra11g1271 11 15343864 15345921 PCT