Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1268 ATGCCGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACCAACGTTACACCTCCCACGCGCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTGGGCAAGACCGCCGCCATCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGTGAGGCCGTCCGAGAGGAGCGCACCGAGCAGGTCGTTTTGCTCAACTACCGTAAGGACGGCACGCCGTTCTGGATGCTATTCTGCGTCTGTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAAGTCCCGCTTCTCAAAAAGGATGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGTTGTCGGAAGGAAGTATGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGGGAAGATCCGTGTGTGGCGAGTGATGAGGAGATGCGAAGTGCCGTCACTGCCATGGACAATATCTTCTCTGTGCTAACCCATTTTAGTGAGGCAACTGGCAGATTAGTGTGTAGGAAGAGGTGCAGCGTTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCGGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGGAAGAAGTGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAGCAATAAAAATGACGATAGGCAGTGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTGAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCAAAGTCGTAG 1158 0.5069 MPMDLCAQIQRSFDQRYTSHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGKTAAIFQGPGTSRRSVMEIREAVREERTEQVVLLNYRKDGTPFWMLFCVCPVFSGDGGAVVHFVAVQVPLLKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELEREDPCVASDEEMRSAVTAMDNIFSVLTHFSEATGRLVCRKRCSVPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYGRSEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEDSNKNDDRQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1268 385 ProSiteProfiles PAC domain profile. 304 358 IPR000700 -
Vra11g1268 385 PANTHER PROTEIN TWIN LOV 1 8 384 - -
Vra11g1268 385 PANTHER PROTEIN TWIN LOV 1 8 384 - -
Vra11g1268 385 ProSiteProfiles PAS repeat profile. 257 279 IPR000014 -
Vra11g1268 385 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Vra11g1268 385 SMART pas_2 19 88 IPR000014 -
Vra11g1268 385 SMART pas_2 232 305 IPR000014 -
Vra11g1268 385 CDD PAS 253 342 IPR000014 -
Vra11g1268 385 Gene3D PAS domain 14 136 - -
Vra11g1268 385 Pfam PAS domain 30 131 IPR000014 -
Vra11g1268 385 Pfam PAS domain 244 343 IPR000014 -
Vra11g1268 385 Gene3D PAS domain 244 383 - -
Vra11g1268 385 SMART pac_2 307 349 IPR001610 -
Vra11g1268 385 SMART pac_2 94 137 IPR001610 -
Vra11g1268 385 CDD PAS 28 130 IPR000014 -
Vra11g1268 385 SUPERFAMILY PYP-like sensor domain (PAS domain) 247 343 IPR035965 -
Vra11g1268 385 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Vra11g1268 385 TIGRFAM sensory_box: PAS domain S-box protein 257 342 IPR000014 -
Vra11g1268 385 TIGRFAM sensory_box: PAS domain S-box protein 43 125 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1268 Vra-Chr11 15255793 15259895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1268 16 376 AGC Kinase Gene Family AT5G58140 30.542 5.64e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1268 - - gmx:100785562 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1268 11 15255793 15259895 Vra11g1268 11 15255793 15259895 ECH