Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1261 ATGGGTTTGGGTGCTGAGAATGGTAAGGTGGTGGAGCCTTGGGATGTGTGCAAATCAAAGGGGAGGAAGAAGAAGAAAGGGAGTGAAGAAGTGGAAGGGACTGGGTCTGGTTGTTGGCTTAGGCTCAGGTTTATGGGCAGCTGCATTTCCTCAAGATCCAAAGTCGATACCTCAGTCAGTGGCAGCGGCACCAGTACTCATTATGCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACGGCCCCAGCAGTCTCTTCTACAACCACTAGTAATGCCGAAAGTAATTCATCCACTTCCAAACTGGAAGAAGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCCCTTTCAATGATCTTAAGTTAGCGACCAGAAATTTTCGGCCTGAAAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAGTGGCTGGCTGAAGTAAATTTTCTTGGCGACCTAGTTCATCCGAACCTTGTTAAACTTGTGGGTTACTGCATTGAAGATGATCAAAGGTTGCTGGTGTATGAGTTCATGCCTCGGGGTAGCCTAGAAAATCACTTGTTTAGGAGATCCCTCCCTCTTCCATGGTCCATTAGAATGAAAATTGCCCTTGGAGCTGCCAAGGGTCTTGCTTTTCTTCATGAAGAAGCCGATCGACCAGTAATATATAGAGATTTTAAGACTTCAAATATACTATTAGATGCAGAGTACAATGCCAAGCTCTCAGACTTTGGTCTTGCCAAGGATGGCCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGCTATGCAGCACCAGAATATGTCATGACAGGTCATCTTACATCAAAAAGTGATGTGTACAGTTTTGGAGTGGTACTACTTGAGATGTTGACTGGGAGAAGATCCATGGACAAACACAGACCCAATGGTGAGCATAACCTTGTGGAATGGGCTCGGCCGCATCTGGGAGAGAGGAGAAGGTTCTACAAGTTGATAGACCCTCGTTTGGAAGGGCACTTTTCGGTGAAAGGTGCTCAGAAAGCTGCCCAACTAGCTGCTCACTGCCTTTGTAGAGATCCAAAATCCAGGCCTCTGATGAGTGAAGTTGTAGAAGCTTTGAAGCCTTTGCCAAACCTCAAGGACATGGCAAGCTCATCATATTATTACCAGACGATGCAAGCCGACCGCATCGGAGCGAGCCCCAACACAAGAAACGGTCGAACACAAGGAGCATTGCTCAGCCGCAACGGACAGCAGCAAAGGAGTCTTTCTATACCAAATGGTACCTATGCATCTCCTTATCACCATCAGTTTCCTCAACCATCCCCAAAGACCAATGGCAAAGCGTAG 1458 0.4643 MGLGAENGKVVEPWDVCKSKGRKKKKGSEEVEGTGSGCWLRLRFMGSCISSRSKVDTSVSGSGTSTHYAESKSTNDTSRDQPTAPAVSSTTTSNAESNSSTSKLEEELKIASRLRKFPFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEADRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYKLIDPRLEGHFSVKGAQKAAQLAAHCLCRDPKSRPLMSEVVEALKPLPNLKDMASSSYYYQTMQADRIGASPNTRNGRTQGALLSRNGQQQRSLSIPNGTYASPYHHQFPQPSPKTNGKA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1261 485 Gene3D Transferase(Phosphotransferase) domain 1 215 431 - -
Vra11g1261 485 Pfam Protein tyrosine and serine/threonine kinase 134 409 IPR001245 GO:0004672|GO:0006468
Vra11g1261 485 MobiDBLite consensus disorder prediction 53 101 - -
Vra11g1261 485 MobiDBLite consensus disorder prediction 53 104 - -
Vra11g1261 485 MobiDBLite consensus disorder prediction 434 485 - -
Vra11g1261 485 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 61 475 - -
Vra11g1261 485 MobiDBLite consensus disorder prediction 1 33 - -
Vra11g1261 485 CDD STKc_IRAK 135 412 - -
Vra11g1261 485 MobiDBLite consensus disorder prediction 13 31 - -
Vra11g1261 485 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1261 485 Gene3D Phosphorylase Kinase; domain 1 88 214 - -
Vra11g1261 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Vra11g1261 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vra11g1261 485 PANTHER OS01G0588500 PROTEIN-RELATED 61 475 - -
Vra11g1261 485 SUPERFAMILY Protein kinase-like (PK-like) 107 409 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1261 Vra-Chr11 15042928 15047063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1261 76 425 Glycoside Hydrolase AT3G07070 52.260 4.25e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra11g1261 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1261 - - gmx:100305443 880.167