Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1256 ATGTTCCACATTGTTCACTCCCTCCCCTTAAAGCACCTCTCACTACCCTTCCACTCTTTTGTTCCTCCCAAATTCATTGTTCCTTTGAATAGGAACTTTTCTTTCATTTTTCCAACTTCTCTCTCTGTCAGATGCAACCACTCCAACATCGTGGAACCCTTCCCACCACTGCCTCAATATCCCTCGGTTGCAGAATTGCCGCAAAGGGTGTACGCAGATTACTCTGTTTATACAGCGAAGGGTGTGCTCACCTTGACTCCTAAACCTCCGGAATTTGAATCAAAAGCTTCTGGGGCGTTTGGGGTGTCTAGGGAAGGTTATATGTTGCTCCAGTTTGCTCCTTCTGTTGGTACCGAAGAATCCATATATGATTGGAACCAAAAGCAGGTATTCTCACTTTCTGTAAGTGAAATGGGGACTCTAATTAGCCTTGGTGCAATGGAGTCTTGGGAATTTTCTCGTAAGACTGCTAAGGCAAAAAGCAATGGAATTGAAGTTAGAAAAGTTTTGAAAGTGGAGCCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAATTGAGGAAAACATCTATCTCCCTATTACAAGGGCGCAGCTAGCAGTTTTAAGGTCAATTTTCAATTATATCGTGCCGTACCTTCTAGGTTGGAATGCATTTGCAAGCACCATAAAGGCAGAGGTATATAGTCAAATGAACAGTGCCAACCCCAGATACAGTGCAAATAATGAATGGAACAGATAG 774 0.4276 MFHIVHSLPLKHLSLPFHSFVPPKFIVPLNRNFSFIFPTSLSVRCNHSNIVEPFPPLPQYPSVAELPQRVYADYSVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGTEESIYDWNQKQVFSLSVSEMGTLISLGAMESWEFSRKTAKAKSNGIEVRKVLKVEPLLDATGHSFSLSVYKKPANMEEIEENIYLPITRAQLAVLRSIFNYIVPYLLGWNAFASTIKAEVYSQMNSANPRYSANNEWNR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1256 257 Gene3D Transcriptional Coactivator Pc4; Chain A 63 245 IPR009044 GO:0003677|GO:0006355
Vra11g1256 257 SUPERFAMILY ssDNA-binding transcriptional regulator domain 68 257 IPR009044 GO:0003677|GO:0006355
Vra11g1256 257 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 59 257 - -
Vra11g1256 257 Pfam Whirly transcription factor 76 216 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vra11g1256 257 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 59 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1256 Vra-Chr11 14971525 14983795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1256 41 257 Whirly Transcription Factor Family AT1G14410 51.364 2.11e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vra11g1256 Whirly 3e-42 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1256 - - gmx:100797370 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1256 11 14971525 14983795 Vra11g1256 11 14971525 14983795 ECH