Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1255 ATGCAGGTTCAAAAGCTCGAATCAGCTAAGAAGGTGTTGGAAGAGGCCAGAGAAGAAAACAAGATGTTGAAGTTCTTGGACATTTTACAACAAGGAAATTCTGCAAATGCTAAAGGTGTAACTAGCCATGAGGAAAGTGAAGAGAGTGAACTTGTGTCGCTTTCTCTTGGGATATCATTGAAAGGAAAGACTAAGGGTGAGAGGAAGCATTGCAAGAGAGAAGATGAGGGTATGGATAAAGGACTCAGACTTGGGTTAGATATCAATTTGGATCCTGTAGATCATGCTGAAGCTGCAAATGTTTCCAGCACTGCAAGTAGTTCTGGTGAGGGAGGGAAGGAAGAAGAACCAAGTGAGATGTGGCCACCCAGTAAAGTTTTGAAGGCAATGAAAAATGTTGATAAAACTGAAGCTTCTCAAAATGATCAGCCCAAGAAAACTAGGGTTTCCATCAGAGCCAGATGTGATACTCAAACGATGAATGATGGGTGTCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGTCCCCGAGCTTACTATCGATGCACTGTTTCTCCATTGTGTCCAGTAAGAAAACAGGTGCAAAGATGTGCTGAAGACATGTCCATATTGATCACAACCTATGAAGGAATTCACAATCATCCACTTCCTATATCAGCGACTGCAATGGCTTGCACAACTTCTGCTGCAGCTTCCATGCTTCAATCTCCCTCATTGAGTTCACAGCATGGACATGGACTAGTCAATTCAGCTATATCCTCCATTACCAATTTCACTGCTCCTAATTACAACCTTCATAATGCTCTAAACTTCTCCACATACCATGTTTCAAGACCACATCAATTCTACTTTCCAAACTCATCTATTTCAAGCTTGAATTCTCACCCCACAATCACTTTGGACCTTACAGCACCCCCAACATCCTCAAACCTTAATATTTCCTCAGGTTTCTCCCCTCTACAATCTAGCATGTCTCCATCACCTTGGAGCAGTTACAGTAGTTACTTCAACTCAGGAGCACCGACTCATGACAGAAACCATGGTGATTACTTGCTAAACACTGGACATCAAAATCGGCCATATCTTGAGCATCTCCATCACCCTATTTGCACGAGCAACAATAACTTTTCTCAACGGTCTTTGCCGGATTCCATTATTGCTGCAACCAAGGCAATCACAAGCAATCCAAAATTTCAATCAGTGTTGGCAACTGCTCTCACAACATATGTTGGCAATGAAGCTGGTGGTGGTAGGTTAAGAGAAAACCATGTTCTTGAGAATGCAGAACTGAACTTAAAGCTATGTAGTGAAAACACCATAGGATGTGCATCATCAAGGTACTTGAACGTGTCTTCTTCTGCTCTTAACCCTCAACAAGGAAACTCAAGTATATTTCCACTACCATCATTACCTGAGCAATGGAAGTAA 1440 0.4181 MQVQKLESAKKVLEEAREENKMLKFLDILQQGNSANAKGVTSHEESEESELVSLSLGISLKGKTKGERKHCKREDEGMDKGLRLGLDINLDPVDHAEAANVSSTASSSGEGGKEEEPSEMWPPSKVLKAMKNVDKTEASQNDQPKKTRVSIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPLCPVRKQVQRCAEDMSILITTYEGIHNHPLPISATAMACTTSAAASMLQSPSLSSQHGHGLVNSAISSITNFTAPNYNLHNALNFSTYHVSRPHQFYFPNSSISSLNSHPTITLDLTAPPTSSNLNISSGFSPLQSSMSPSPWSSYSSYFNSGAPTHDRNHGDYLLNTGHQNRPYLEHLHHPICTSNNNFSQRSLPDSIIAATKAITSNPKFQSVLATALTTYVGNEAGGGRLRENHVLENAELNLKLCSENTIGCASSRYLNVSSSALNPQQGNSSIFPLPSLPEQWK* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1255 479 MobiDBLite consensus disorder prediction 98 125 - -
Vra11g1255 479 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra11g1255 479 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 460 IPR044810 GO:0003700
Vra11g1255 479 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra11g1255 479 Gene3D WRKY domain 145 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra11g1255 479 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra11g1255 479 Coils Coil 3 26 - -
Vra11g1255 479 PANTHER WRKY TRANSCRIPTION FACTOR 72B 13 460 - -
Vra11g1255 479 SUPERFAMILY WRKY DNA-binding domain 153 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1255 Vra-Chr11 14939425 14941436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1255 7 415 WRKY Transcription Factor Family AT5G15130 37.234 1.68e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra11g1255 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1255 - - pvu:PHAVU_002G089700g 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1255 11 14939425 14941436 Vra11g1255 11 14939425 14941436 ECH
Vra11g1255 11 14939425 14941436 Vra7g1711 7 35704160 35708033 ECH
Vra11g1255 11 14939425 14941436 Vra4g0996 4 17085075 17087997 ECH