Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1249 ATGGGGAAAGGAAGAAGTCCTGGCAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGGCAAAGTCTACTTCATCGAAGAAGAATGATATTTTTGTACCTGTGTCTGATTCACCTGTCAATTCTCTGGTGATATCCCCGCCGATATCTGGTGCTAATGATACCAAAGGAGTGCTTTCAGAAAAGGAGGTAGTTAGTAAATCTTCACATGATAACAATGTTCTTTCAACTGGAGATGAAGAGGCCAAGGTGAAGGATGTTACTAATTTTGAAACTCAAGAGGATCCTGAGAAACTTCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCCGCTTGTAGAAGCTATCTGGCTCGTCGAACATTTCAAACACTCAAAGGTGCCATACAACTACAAGCTCTCATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGCCATGCTGTCCAGAAGATTTGTAAGGATACTCATTGTTCAAATTCTATTTTGGTAGTTTCATCAGCACGGGAAGAGAAGGTGTCAGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCACCAGTGATCCAGGAGAACCTAACTTTGGTTGGAAGTGGCTTGAATATTGGACACTGTCACACTTTTGGGCACCTCATCCTGTATTGAAAAAGAAATCTGACTCACTGTCTGATGAGAAAAATGGCAGTTCCCAGACAGTTCAAAGGGGACAAGTTAAAAGAACTACTAGAAAATCTCCTGCCGTGAAAGGTGACAATGGCTCTGTTTTAGCAGCTAACAGATCTAAGCAGCGTCCAAAAAAGGATTCAAGCCATCCATTGCCTTCAGCTCAAGAACACCCACAAAAAGAAACTGAAAAAAGTAGTCTTGAGAAAAAACTTGCACTTAATGTTTCAAATGGATCTGAGGTTGTTAACGAAAAAAGGAAAAACAGCAGTAGAAAGATTTTGGATCACAGTGTCACTGACGTTTTAGAGCAGGTCCCAAATGCCTCTTCAGAGAAAATGGAAGATTTGACGGTGGCAAAGTCAGAAGAGTCTGATCCTGGGAAGGGTCATGCACAGCCAGCAAAAGATGAGAATTGTAATGAGCCACATAATGATCCTATTTCTGTTTCAAGGACTAGTGTGAAGAAGGGTGAAAATGAAAAAAATCAAGGAGTTGGTGAGGATCAGAATGGTGGTGATGATAATTGTATCAGTAACAATTGCCAGAGAAGAGCTTCACTACCTGCAAACTTTAATGATCAAGATGGTGAGGTATATGCCACTCCTGTCACTCCAAGACTGCCCAGTTATATGGCTCCTACCGAATCTGCAAAGGCCAAGCTAAGAGGACAAAACTCCCCAAGATTTGCTACTGATTTGGTAGAAAAAAGCAGTACAACCAGGCGGCATTCACTTTCATCCTCACTAAATGGAAGGTCAGGTTCATTTTCCCCGAGAGCTGAAAGGCTGATGGCCGTGAGTGGCAGAGGAGTGATAAAGTCTGATAGATCTCTGTCATCTTCAAGAGATGGAACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1656 0.4203 MGKGRSPGKWFKNLLLGKKSSAKSTSSKKNDIFVPVSDSPVNSLVISPPISGANDTKGVLSEKEVVSKSSHDNNVLSTGDEEAKVKDVTNFETQEDPEKLQLTEAAIKVQAACRSYLARRTFQTLKGAIQLQALIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGHAVQKICKDTHCSNSILVVSSAREEKVSENVFVCKLLASSPYAVPLSLTSDPGEPNFGWKWLEYWTLSHFWAPHPVLKKKSDSLSDEKNGSSQTVQRGQVKRTTRKSPAVKGDNGSVLAANRSKQRPKKDSSHPLPSAQEHPQKETEKSSLEKKLALNVSNGSEVVNEKRKNSSRKILDHSVTDVLEQVPNASSEKMEDLTVAKSEESDPGKGHAQPAKDENCNEPHNDPISVSRTSVKKGENEKNQGVGEDQNGGDDNCISNNCQRRASLPANFNDQDGEVYATPVTPRLPSYMAPTESAKAKLRGQNSPRFATDLVEKSSTTRRHSLSSSLNGRSGSFSPRAERLMAVSGRGVIKSDRSLSSSRDGTEKLIQPQWRR* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1249 551 MobiDBLite consensus disorder prediction 489 551 - -
Vra11g1249 551 Gene3D - 100 150 - -
Vra11g1249 551 MobiDBLite consensus disorder prediction 420 445 - -
Vra11g1249 551 MobiDBLite consensus disorder prediction 371 398 - -
Vra11g1249 551 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 548 - -
Vra11g1249 551 MobiDBLite consensus disorder prediction 295 324 - -
Vra11g1249 551 MobiDBLite consensus disorder prediction 252 466 - -
Vra11g1249 551 Pfam Protein of unknown function (DUF4005) 450 530 IPR025064 -
Vra11g1249 551 MobiDBLite consensus disorder prediction 259 275 - -
Vra11g1249 551 Pfam IQ calmodulin-binding motif 126 143 IPR000048 GO:0005515
Vra11g1249 551 Pfam IQ calmodulin-binding motif 103 123 IPR000048 GO:0005515
Vra11g1249 551 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Vra11g1249 551 PANTHER IQ-DOMAIN 5-RELATED 1 548 - -
Vra11g1249 551 MobiDBLite consensus disorder prediction 529 543 - -
Vra11g1249 551 MobiDBLite consensus disorder prediction 340 354 - -
Vra11g1249 551 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Vra11g1249 551 SMART iq_5 149 171 IPR000048 GO:0005515
Vra11g1249 551 SMART iq_5 101 123 IPR000048 GO:0005515
Vra11g1249 551 SMART iq_5 124 145 IPR000048 GO:0005515
Vra11g1249 551 MobiDBLite consensus disorder prediction 489 511 - -
Vra11g1249 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 168 IPR027417 -
Vra11g1249 551 MobiDBLite consensus disorder prediction 325 339 - -
Vra11g1249 551 ProSiteProfiles IQ motif profile. 126 153 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1249 Vra-Chr11 14888651 14893935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1249 4 551 IQD Protein Family AT1G14380 36.661 1.68e-78 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1249 - - gmx:100800548 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1249 11 14888651 14893935 Vra11g1249 11 14888651 14893935 ECH
Vra11g1249 11 14888651 14893935 Vra3g1099 3 11392290 11399705 ECH