Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1246 ATGTCAACTTCTTGGAAAATGGCTCAATTTGGTTTGCTGGTCTTGGTGGGGCTTCTTCTCACAATGTCCTCCTCTGCCTATGGCTATGGCTATGGTGGAGGCTGGGTTAATGCGCACGCTACCTTCTATGGAGGGAGTGATGCATCTGGAACAATGGGTGGGGCTTGTGGGTATGGGAATCTCTACAGCCAGGGTTATGGAACAAACACTGCTGCTTTAAGCACTGCTTTGTTCAATAGTGGTCTGAGCTGTGGTTCATGCTATGAGATAAGGTGTGTGAGTGACCACAGGTGGTGCCTTCCCGGTTCCATTTTGGTCACTGCAACCAATTTCTGCCCTCCAAATAATGCCTTACCCAACAATGCAGGAGGGTGGTGCAACCCTCCCCTGCACCATTTTGACCTCTCTCAACCTGTTTTTCTGCGCATTGCACAATACAAAGCAGGAATCGTGCCTGTGTCCTACAGAAGGGTGCCCTGCAGAAGAAGGGGTGGCATAAGGTTCACAATCAATGGTCACTCCTACTTCAACCTGGTCCTGATAACAAACGTAGGAGGTGCTGGGGATGTGCATAGTGTGGCCATAAAAGGGTCAAGAACTGGATGGATGCCAATGTCCAGGAACTGGGGTCAGAATTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTTAAGGTCACAACCAGTGATGGCCACACAGTGGTGTCCTACAATGTTGCCCCTGCTGGGTGGTCCTTTGGACAAACATACACTGGTGCTCAATTCCGCTAG 777 0.5006 MSTSWKMAQFGLLVLVGLLLTMSSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCVSDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGHTVVSYNVAPAGWSFGQTYTGAQFR* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1246 258 Gene3D - 21 161 IPR036908 -
Vra11g1246 258 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Vra11g1246 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 165 IPR007112 -
Vra11g1246 258 SMART dpbb_1 70 155 IPR007112 -
Vra11g1246 258 Gene3D - 165 257 IPR036749 -
Vra11g1246 258 Pfam Lytic transglycolase 70 155 IPR009009 -
Vra11g1246 258 PANTHER EXPANSIN 13 257 - -
Vra11g1246 258 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Vra11g1246 258 SUPERFAMILY Barwin-like endoglucanases 18 183 IPR036908 -
Vra11g1246 258 PANTHER EXPANSIN-A15 13 257 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Vra11g1246 258 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Vra11g1246 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Vra11g1246 258 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Vra11g1246 258 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Vra11g1246 258 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Vra11g1246 258 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Vra11g1246 258 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Vra11g1246 258 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1246 Vra-Chr11 14490255 14491754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1246 7 258 Expansin Gene Family AT2G03090 81.746 5.84e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1246 - - gmx:100796316 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1246 11 14490255 14491754 Vra11g1246 11 14490255 14491754 ECH
Vra11g1246 11 14490255 14491754 Vra3g1060 3 10799326 10801564 ECH
Vra11g1246 11 14490255 14491754 Vra4g1035 4 17563815 17565420 ECH