Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1242 ATGGCCAGCAGCAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTACCCTTTTCCATCTTCTCCTTCAATGGGAATGGTCTGTGCAGACATGATGGGGTCTCTCTCTCTTGCTACTGTTTCAAATGCTCTTTCATCTCAAGAAAGCTTTGCTTATGGCCATCATGGTCATACTTCTGGGGTGGGAAATGGAAGGAGCACAAGCTGGAGTTTTCCCTTCATGAGGGAGTTCCTCTCTTCAAACTTTGAAGACTGTAGTGAAGTTGGGGCTGGGGAGACTAACAGTAATGAGAAAACAAACAACAATGGCAAGTTTAGTGAAGAAAGTAACCCTAACGAGAACCTTCTCAGTGGCAAAGAGGTAGATAGTGGACACTCTAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTCGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGCTGTAGGCTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAGTCCAGTGCTTACAGGAGGAGGAGAATGAGCCAATCTGTTTACAAAAGGGTGGAGCAAAATCCAACCTTTGTTTGCAGCAGGGACAATGCTTCAACCACGGAACAAGAACCATCGCCTTCTTATTGTCTCAATCTCCTCCACAATGGAGTAGGAGTCACAAATAACCTGGCTAGTTTCCCATCCTTCCATGGAGTAGGTTCTGGTGAGGTTGTTGATTTTGGCTTAAATGGTTCTCTACAAAACATTAATGGTGTGAGAGAAGCAATGTCAAACACCCTACAAGTTGGCTTGCGTGCTCAAGCTCAACAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGGAATGACATGACGGGAGAGTCTAACGGGGAGATCAGAAGCTGGGAGAGGAGCAATGAATCTGTTGAATCTGGTTTATACCCTGATTATCCCCAACAATATTTGAGGGCAATGCAACAGCTAGAGAACAAGACACGCAAGAATTTTTACAGTTTCTTGAATTCCTCATGGGCATCAGGAAGCACAGGCAAGGAAGCATCATCATCAGCATGTGTTGCAGGAAAGAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1365 0.4564 MASSKCCMISSQQNQNAPTCYPFPSSPSMGMVCADMMGSLSLATVSNALSSQESFAYGHHGHTSGVGNGRSTSWSFPFMREFLSSNFEDCSEVGAGETNSNEKTNNNGKFSEESNPNENLLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYKRVEQNPTFVCSRDNASTTEQEPSPSYCLNLLHNGVGVTNNLASFPSFHGVGSGEVVDFGLNGSLQNINGVREAMSNTLQVGLRAQAQQAPFDFFSGGGRNDMTGESNGEIRSWERSNESVESGLYPDYPQQYLRAMQQLENKTRKNFYSFLNSSWASGSTGKEASSSACVAGKRDKVVNSDPPDGVPPPFFDFLGVGAT* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1242 454 Gene3D - 136 187 - -
Vra11g1242 454 ProSiteProfiles Myb-like domain profile. 136 182 IPR001005 -
Vra11g1242 454 CDD SANT 139 180 IPR001005 -
Vra11g1242 454 SMART sant 187 235 IPR001005 -
Vra11g1242 454 SMART sant 135 184 IPR001005 -
Vra11g1242 454 CDD SANT 190 230 IPR001005 -
Vra11g1242 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Vra11g1242 454 PANTHER MYB TRANSCRIPTION FACTOR 29 454 - -
Vra11g1242 454 Pfam Myb-like DNA-binding domain 136 182 IPR001005 -
Vra11g1242 454 Pfam Myb-like DNA-binding domain 188 231 IPR001005 -
Vra11g1242 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 182 IPR017930 -
Vra11g1242 454 PANTHER MYB PROTEIN-RELATED 29 454 - -
Vra11g1242 454 MobiDBLite consensus disorder prediction 93 126 - -
Vra11g1242 454 MobiDBLite consensus disorder prediction 93 124 - -
Vra11g1242 454 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Vra11g1242 454 Gene3D - 189 260 - -
Vra11g1242 454 SUPERFAMILY Homeodomain-like 136 229 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1242 Vra-Chr11 14285260 14287887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1242 81 261 MYB Transcription Factor Family AT1G69560 65.027 3.17e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g1242 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1242 K09422 - gmx:100776292 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1242 11 14285260 14287887 Vra11g1242 11 14285260 14287887 ECH