Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1239 ATGGATCTACAAAACATGCAAAATCAGAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTAAAGTGGACTCCTGAACTTCACCAACGGTTCATTGAGGCCACAAATCAGCTTGGAGGTGCAGATACAACTCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATAGCTCAGGCCCTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTCCGAATTGAAGCTCAAGGAAAGTACTTGCAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAATTCTGCCCCAGTGGGGATAGAGCTCACAAAAGCTGAACTTTCCCAGCTTGTCACCATCATCAACAATGCTTGTCCAAGCTCTCCCATCTCAGAACTAACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGACAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACATCTTCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAATCAATGGAAGAGATAGAGGAGTTCAAAAGCTCCAATAATGCTTCAGTTGAATTGCCGTTGATGGGCTTTCACACTGAGAATAAAGCATCTAACACAGGCTCTAGCAATGAGGCCAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTAATGATGGTAGATATGTTGTTGAACAACCATGTGGAAAAAGAAGTGGCAACAAGTTCAGAAAGCCAGAAATGCTTGACTTGAACAGCCAATGCCAGATTGACATGGACTCAACAACTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGGAACCATGA 1032 0.4293 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADTTPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEIEEFKSSNNASVELPLMGFHTENKASNTGSSNEASGRKRSAATKSNDGRYVVEQPCGKRSGNKFRKPEMLDLNSQCQIDMDSTTSKTLDLNCSLNFWEP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1239 343 MobiDBLite consensus disorder prediction 231 246 - -
Vra11g1239 343 MobiDBLite consensus disorder prediction 75 98 - -
Vra11g1239 343 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 74 IPR006447 GO:0003677
Vra11g1239 343 MobiDBLite consensus disorder prediction 265 285 - -
Vra11g1239 343 Coils Coil 119 139 - -
Vra11g1239 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 76 IPR017930 -
Vra11g1239 343 MobiDBLite consensus disorder prediction 218 251 - -
Vra11g1239 343 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Vra11g1239 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 340 IPR044848 GO:0003700
Vra11g1239 343 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 340 - -
Vra11g1239 343 MobiDBLite consensus disorder prediction 265 309 - -
Vra11g1239 343 Gene3D - 17 77 - -
Vra11g1239 343 Pfam MYB-CC type transfactor, LHEQLE motif 116 162 IPR025756 -
Vra11g1239 343 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1239 Vra-Chr11 14016515 14018983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1239 11 335 G2-like Transcription Factor Family AT1G69580 47.198 5.34e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g1239 Myb_DNA-binding 9.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1239 - - gmx:100787178 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1239 11 14016515 14018983 Vra11g1239 11 14016515 14018983 ECH