Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1237 ATGGCTTCAGGGACTGAGGTGCCGGAGAATTCTGTTTTCGAGAGGTTGGACCGAAACAGAGACATAACTCTGTTTCTTCCCTTTCTCTTTGGCCTCTCGGAGACCGCCCCAGGAAGAGATGGCGACGACCCACGTCACGAAAACGGGAACACTGAAGGCCCCCAGCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTCATCGACGCCGACTCGCGCCTCGAAGCTCTGTTTCGCGAACTCGGCAGCGGAAAAGGTGGTCGACCTCCGGCTTCCAAAGAATCCATTGAGGCCATGCCAAGTGTGGAAGTTGGAGAGGGTGAGGATTTGGAGTGCGTGGTTTGTTTGGAGGAGTTTGAGGTTGGTGTGGTGGCGAAGGAGATGCCGTGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAGTGGTTGGGGCTTCATGGATCTTGCCCTGTGTGTAGGTATGAGATGCCCGTGGAGAAGAATTGCGTGATGAAGAGCGAGGAAGAAGGGGGAGAGAGGAGAAGGGATGGTGGTGATGAAGTTTGGGTTAGTTTTTCTTACAATAGGATTAGGAGAGGCCAGGATCATGATCAAGCTGCTTCTTCAAATGATGATTCTCGATCAAGTCCTGGAGATGATGCTGTAGAGAATTAG 666 0.515 MASGTEVPENSVFERLDRNRDITLFLPFLFGLSETAPGRDGDDPRHENGNTEGPQRQRIILVNPFTQGMVVIDADSRLEALFRELGSGKGGRPPASKESIEAMPSVEVGEGEDLECVVCLEEFEVGVVAKEMPCKHKFHGDCIEKWLGLHGSCPVCRYEMPVEKNCVMKSEEEGGERRRDGGDEVWVSFSYNRIRRGQDHDQAASSNDDSRSSPGDDAVEN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1237 221 SMART ring_2 116 156 IPR001841 -
Vra11g1237 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 163 IPR013083 -
Vra11g1237 221 Pfam Ring finger domain 115 157 IPR001841 -
Vra11g1237 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 169 - -
Vra11g1237 221 MobiDBLite consensus disorder prediction 197 221 - -
Vra11g1237 221 MobiDBLite consensus disorder prediction 35 56 - -
Vra11g1237 221 MobiDBLite consensus disorder prediction 38 52 - -
Vra11g1237 221 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Vra11g1237 221 PANTHER - 11 169 - -
Vra11g1237 221 SUPERFAMILY RING/U-box 103 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1237 Vra-Chr11 13997911 13998986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1237 4 209 C3H Transcription Factor Family AT1G26800 51.208 1.96e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1237 - - ccaj:109816232 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1237 11 13997911 13998986 Vra11g1237 11 13997911 13998986 ECH