Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1228 ATGTTGAATGTTGATGTCAATGGGAACAACAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGCTGAACCTGGTTACCCTGTCATGTTTGGTGGGCCATTTCGTGAGAATGTGAATGCATTGCTTCAATATGCAAATTTGGAGAGTGATTTAAGCATGCCAATGTGGTCTTTTCAACTGGAAGTTCATCAGCAACCTCCTTTGCATGTCTTGCTGTTTGTGATTGAAGAGGCAACAGAAGCAGTGGTGAATCGTCATTGCAAGCATTGTCAATACGTTGGCTGGGGAAAGCATTTGATATGCAACAAGAAGTATCACTTTGTGTTACCATCAAAGGAAGGAGTTGGTAGCTGCAGGAAGTGTGAAGGGTGCTGTAGAGATAACAATGGTAAGTCGAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCTAATTTGGCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAGGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAGAAGAAAGGAATGGAACTGAGACTTGTAAATGGAATAGGATACAGTGAGTCATGGTTCAGTCGTTGGGGTTACAAATTTGGGAGAGGAAGCTTTGGTGTAACTCAATCAATGTACCAGAAAGCCATAGAAGCAATAAGAAGCATGCCACTGTATTTGATCACACACCACATAACAAATTCCAACCACGCCATTCCACTCATCTTCTCAAGATATCAAACACTTTCAGATCAGTCTCTTCTTACCCTCGGTGACCTCTTTTCTTACATGTTAGACCTCAAATCACGTCTTCCTCCAGAAACTTCCATTGCCTCTTACACCACAACAGCTTTGCTTGAGACCAATTGCCGTTGGTCCCCTAAGAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAGAAAACTGAGTTCAGATGGGTTTCAAGGCAACAAGTTAGAGATGCTGCTCGTGCATACATTGGAGACACAGGTCTGCTAGATTTTGTCTTGAAGTCCTTAGGAAACCATGTCGTGGGAAACTACTTGGTTCGTAGAAGCTTGAACCCTGTCACCAAAGTCTTGGAATATTGCTTGGAAGACATTTCTAAGGTTTACCCTTGTAATGAAAGTCTGGTAATGAGCAACAAGTACAAGATCACACGAACTCAACTCATGAAAGACATGCTTTATCTGTATAAGTACATTCTCATAGACCCTAAACCTATCATGGGCTCAGAGTTTCTCTCAGCTATACCATTAGCAGCAAGGATAATTCTTGACACCAAGTATTTTATAAGAGATTACTGGGAAGATTTTTCTCACCAAGTTCACCTGGGTTCGGAAGAAAAGCTCAACCTTTACTGCACAATTTTGCTGAGGAATGATGGTGATGAGTACCAACTAAACAAGGCCTTTATGCCACCCGATGAATGTGTGACAGTGAAAAGAAATGCTACTGTGAATGAGTTGAAGGTGGAGGTTGAAAGAAGGTTTAGAGAAATTTATTGGGGTTTGAGGAGTTTCGTGGTGGAATCAGTTGAGAATTTGAGTGTGAATAATGGAAATGAAATGGTTTTAGGAGTAATGAAAGTGGGTGAAAAGGTGGTGTTTGAAGGTCGTTGTGATAGGAACATGAAAGAAAAGATTAATATTGAGGAAATGTGTGAAGGTGATCCAAATAGTGGAACTGTGGATTGTAGTTGTGGAACGATGGAAGAAGATGGTGAAAGAATGGTGTGTTGTGATATTTGTGAAATTTGGCAACACACTAGATGTGTTCGAATTCCAAATGACCAAGACATTCCTCATATTTTTCTATGCAAAAAATGTGAACAAGAAATTGTTTTGCTTCCTTCTTTCCCATGA 1938 0.4071 MLNVDVNGNNKRKRCGRVFRFKNFAEPGYPVMFGGPFRENVNALLQYANLESDLSMPMWSFQLEVHQQPPLHVLLFVIEEATEAVVNRHCKHCQYVGWGKHLICNKKYHFVLPSKEGVGSCRKCEGCCRDNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCKGLQARKVSLNDISQKKGMELRLVNGIGYSESWFSRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLITHHITNSNHAIPLIFSRYQTLSDQSLLTLGDLFSYMLDLKSRLPPETSIASYTTTALLETNCRWSPKRIEMATRVIVEALKKTEFRWVSRQQVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISKVYPCNESLVMSNKYKITRTQLMKDMLYLYKYILIDPKPIMGSEFLSAIPLAARIILDTKYFIRDYWEDFSHQVHLGSEEKLNLYCTILLRNDGDEYQLNKAFMPPDECVTVKRNATVNELKVEVERRFREIYWGLRSFVVESVENLSVNNGNEMVLGVMKVGEKVVFEGRCDRNMKEKINIEEMCEGDPNSGTVDCSCGTMEEDGERMVCCDICEIWQHTRCVRIPNDQDIPHIFLCKKCEQEIVLLPSFP* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1228 645 SMART PHD_3 589 635 IPR001965 -
Vra11g1228 645 Pfam PHD-finger 590 636 IPR019787 -
Vra11g1228 645 SUPERFAMILY FYVE/PHD zinc finger 580 637 IPR011011 -
Vra11g1228 645 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 645 - -
Vra11g1228 645 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 645 - -
Vra11g1228 645 ProSitePatterns Zinc finger PHD-type signature. 590 634 IPR019786 -
Vra11g1228 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 638 IPR013083 -
Vra11g1228 645 CDD PHD_MMD1_like 589 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1228 Vra-Chr11 13696350 13699682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1228 11 645 PHD Transcription Factor Family AT5G22260 50.679 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra11g1228 PHD 1.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1228 - - gmx:100780210 1073.54