Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1226 ATGAGCGATCACTTGGTGCTGTTCGTTGACCGTCTCGCACGCCCTGTCCCCGTTGACCCGGTGGCACAGCCGGCGCGGCTTCCCTCCGAGCCCTCTCCGCCTCCGGCTGCCGCGGATGCCACCACAGCCGCCGCCGGGAGTTCGGGCACCGCTCCGGCGGAGGATCACGTCGGGGAGGGATGTGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAAGAGGACGGCGTTTCCAATTTGGAAACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTTCAGCATTGGTGTGATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTACACTGCACCACCTCCTCGTCCTAACCCTGAAGAAACTACTATTGATATAGGAGGTGGATGGACAATATCTGGCACACCGTTGGACTTGCGTGATCCTCGGCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGGGCTGCATTCTGCCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTACTCTTGCGGCATGCACTTTCTGTCTCGGATAGTGATTCTTCTGACGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCGGCTGGATTTTTATTACCTTGCTACATTATGGCCTGGGCAATCAGTATTCTGCAGCGTCGACGACAGAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTGCAATCTGGGCAGCGTAGAGGTCTACAGTTCGCAATAGCACCAGGACCAGCCACAGTACACCAGGAACAAGTGTAA 876 0.5388 MSDHLVLFVDRLARPVPVDPVAQPARLPSEPSPPPAAADATTAAAGSSGTAPAEDHVGEGCDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDSDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPATVHQEQV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1226 291 Pfam Protein of unknown function (DUF3675) 124 243 IPR022143 -
Vra11g1226 291 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Vra11g1226 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 124 IPR013083 -
Vra11g1226 291 SMART ringv_2 72 119 IPR011016 GO:0008270
Vra11g1226 291 MobiDBLite consensus disorder prediction 21 35 - -
Vra11g1226 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 289 - -
Vra11g1226 291 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 289 IPR033275 -
Vra11g1226 291 MobiDBLite consensus disorder prediction 20 61 - -
Vra11g1226 291 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Vra11g1226 291 SUPERFAMILY RING/U-box 71 123 - -
Vra11g1226 291 CDD RING_CH-C4HC3_MARCH 73 119 - -
Vra11g1226 291 Coils Coil 291 291 - -
Vra11g1226 291 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1226 Vra-Chr11 13680872 13685074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1226 72 148 C3H Transcription Factor Family AT2G37950 37.079 3.35e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1226 - - gmx:100779674 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1226 11 13680872 13685074 Vra11g1226 11 13680872 13685074 ECH