Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1225 ATGGACCTCACCAACAACGCCAACGACACAGATTCTCAAACTCAAACCCCCCAACACCCCACCACCACCACCAACGGCTCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCTCCCTCACAACCACCGCCCGCGGTGGTTTCCTACAAGGAGTGCCTCAAAAACCACGCTGCCAGTATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCGCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACAACAGTATCAAAATAATCACTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCCGGCCTGTGTACCAGCTCAAGCCCAGGCCCGAGTCCAAGCCCAAGTCCGTTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTCCGAGACCGGTCCGGGGGCTCTTCGGCCAGGGAAACGAGCATCACCTTACGAGTTTCAATATTTCCGAGAGCCGGAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCTGAGAATTTAGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACAGTAGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGTCAACGCTTCTGATACTCTTAATAACAATCCATACAGCACCACCGATGACACTCACTGA 837 0.5496 MDLTNNANDTDSQTQTPQHPTTTTNGSLKRHRPTTVPPPSQPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTQQYQNNHSNPRPNFISFYHSPPPPHHGPGLCTSSSPGPSPSPSPLSSPSPPPLSHRFPGPRPVRGLFGQGNEHHLTSFNISESRSGKKRFRTKFSQEQKEKMQNFSENLGWRMQKGDEGLVQDFCNEIGVSRGVFKVWMHNNKNSSRKRSLEPDEKINVNASDTLNNNPYSTTDDTH* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1225 278 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 100 IPR006456 -
Vra11g1225 278 MobiDBLite consensus disorder prediction 117 159 - -
Vra11g1225 278 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 100 IPR006456 -
Vra11g1225 278 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 23 249 - -
Vra11g1225 278 MobiDBLite consensus disorder prediction 1 46 - -
Vra11g1225 278 MobiDBLite consensus disorder prediction 258 278 - -
Vra11g1225 278 MobiDBLite consensus disorder prediction 1 31 - -
Vra11g1225 278 Gene3D - 177 249 - -
Vra11g1225 278 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 188 245 IPR006455 -
Vra11g1225 278 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 23 249 - -
Vra11g1225 278 SUPERFAMILY Homeodomain-like 180 249 IPR009057 -
Vra11g1225 278 Pfam ZF-HD protein dimerisation region 47 101 IPR006456 -
Vra11g1225 278 MobiDBLite consensus disorder prediction 243 278 - -
Vra11g1225 278 MobiDBLite consensus disorder prediction 103 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1225 Vra-Chr11 13613550 13615600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1225 47 246 ZF-HD Transcription Factor Family AT1G69600 47.826 1.51e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra11g1225 ZF-HD_dimer 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1225 - - gmx:100785050 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1225 11 13613550 13615600 Vra11g1225 11 13613550 13615600 ECH