Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1222 ATGGAAGAGATAAACAATGATGCTGAGAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTCACTATTGAGCTCATCAAACAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCGACCACGGGAGAGAAAGAGTGGTATTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACTGGGACTGATAGGCCAATCTACTCCTCAGAAGGTTCCAAGTGCATTGGGCTGAAGAAATCTCTGGTTTTTTACAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGATTCACTGTCCCCAAAGTATATAGACAAGAACATTCCTGCTAATGAATCATGGGCTATTTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTATCTCAGTCTTGGGTTTCTTCCCTTCCTGAAACAAGAACCTCTGATCATATCCAAACCAAAGATCAAAACAGCATGCAGTTTTGTTCAGACATATCGTTTACAAAGAAAACTACCTTAGCCAGTCATTACTTTACTAACAATTACAATGACGCACAACCTTTGACTCCTAATAGTAGTACCACACTTTGTCCCTTAGATGTTGCCTCATACAAATCCATCATAAACCCATTGCTTTACAAAGCATTTGATCATTTTCCCATTTCAAATGGAGACCTGAGCACGAGCTTTCTGTTCTCATCTCCTTTTGACACGTCATCAGATGGTAATACTAATGCTAAATCTACCATGGACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCGTGGTTGGAGATTTCAACAAGACTTCAGAGGATAATACAAATGCAAATACAAGCTTTGGTGGGTTGCAAGAGCATGGCGCCTACCCAATACCATTTCTACGTGAGATGCAAAGCACATTTGGTGAACAACAATATGATAATATTCATGCATTGGTAAAGGGTCCTAATGTGAATATGCCTCGTGTTGATGACCAAGAATTGGAAACCGTACGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATCTGTCATCTACTTATTCCATAACTAAGTGCTATACTTAG 1257 0.4089 MEEINNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPFTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKNIPANESWAICRIFKKTNATAQRALSQSWVSSLPETRTSDHIQTKDQNSMQFCSDISFTKKTTLASHYFTNNYNDAQPLTPNSSTTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSFLFSSPFDTSSDGNTNAKSTMDVSSMLLNMSSSVVGDFNKTSEDNTNANTSFGGLQEHGAYPIPFLREMQSTFGEQQYDNIHALVKGPNVNMPRVDDQELETVRSIGFPFNIGDAWKSNLLWDTSSFPCDLSSTYSITKCYT* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1222 418 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Vra11g1222 418 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 416 - -
Vra11g1222 418 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vra11g1222 418 Gene3D NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Vra11g1222 418 PANTHER PROTEIN FEZ ISOFORM X1 1 416 - -
Vra11g1222 418 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1222 Vra-Chr11 13444783 13446513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1222 1 258 NAC Transcription Factor Family AT1G26870 63.235 1.41e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra11g1222 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1222 - - gmx:100783995 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1222 11 13444783 13446513 Vra11g1222 11 13444783 13446513 ECH