Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1209 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACAGAACAACCTTGTTCCACCACTACCAGGGACAGCGTCGTAACTGCAACTACTATTACTACTGCTTCTGTAACTAATAACAACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCGAAGAGAACTTCCACCAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGCATGCCGGCCGCCTGTGCTGCTAGAGTCTTTCAGCTAACGCGTGAGCTCGGACACAAGTCTGACGGAGAGACCATAGAATGGCTCCTTCAGCAGGCCGAGCCTGCGGTCATCGCTGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCTTCGCACTACTTTCGCGGAAACTACTTCAACCCTAGCACTTTCTCCACCTCTACAGCTGCGGCTGCGGCGGCGGCGCAGCTAAGGAACCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAAGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTTAACCCTATGGGTAACATCAATGTAATTCAGCAAGCGAAACAAGAGCTTCGAGAAGAATCTGGTGGCGGTCTTGAATCGGTTGCTTCGGATTCTGACGGAAGCTTGGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCATCGAGCCACGCTTCCAATACTGCGGCGTTTTGGATGGTGGCAGGTCACGGTAACCAATCCATGAGCGGTGGTGGCGGTGGCGGCAGCGGCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCCGTTGGGAACAGTGGGGTGTATAGAGGAGGTATGTCTCCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAGCTGGGTTCTGGTATGGTTGGTGGCGGAGGTGGCGGTGGTGGTAGCGGCGGTGCTCAACTTCTAAGCGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCGGAGTCTCCAGGAAGCGCCGGACAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCAACATTCCTGA 1263 0.5479 MELEADHQNGIRTRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATTITTASVTNNNLHLAEQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAQLRNRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQSMSGGGGGGSGNGNDNPIWAIPSVGNSGVYRGGMSPPGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGGGSGGAQLLSESNLGMLAALNAYRQIPANGVSESPGSAGQPHGGDDGRDSTSQHS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1209 420 MobiDBLite consensus disorder prediction 55 84 - -
Vra11g1209 420 MobiDBLite consensus disorder prediction 234 263 - -
Vra11g1209 420 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 4 420 - -
Vra11g1209 420 MobiDBLite consensus disorder prediction 65 84 - -
Vra11g1209 420 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Vra11g1209 420 Pfam TCP family transcription factor 73 198 IPR017887 -
Vra11g1209 420 MobiDBLite consensus disorder prediction 393 420 - -
Vra11g1209 420 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 420 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1209 Vra-Chr11 12966581 12968482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1209 15 353 TCP Transcription Factor Family AT3G47620 38.000 2.50e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra11g1209 TCP 3.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1209 - - var:108335197 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1209 11 12966581 12968482 Vra11g1209 11 12966581 12968482 ECH