Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1203 ATGGAATTTGAGGATCAGGAGGACCAAGAGGAGGAGCAGTGTATGGGTGCCGCAGCTTACGACCCCACCCGGGTCAAGCTTCCGCTCGGTCCGGAGGCAGTTATGGCGGCTCAGCCGGTCAGAAGCACCACCAACGGCGGCGCTGGGAGGGCACGCTACAGAGAGTGTCTGAAGAATCACGCTGTAGGCATCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGGCAGCGGGGACGGAGGGTTCTCTCGACGCGCTTAAGTGTGCAGCCTGCAGCTGCCACCGTAACTTTCACCGCAAGGAGAGCGATGGGGCCGGCGCCTCCGTCGGCGTTGGGGACCCGTACTTGGTTTCGCACCACCCCTTGCACCACGGTCCGCCGCCTCAGTTCGCGGCATACTACCGGACCCCAACTGGATACCTTCAGGTGGGGGGGCAGGCGCGCGTGGCTGGGACGCTGGCGCTGCCGTCGACATCAGGCGGCGGTGGGACGCAGAGCACTCGGGAGGACCAGGAGGACATTTCGAACCCGAGTGCAGGAGGAACGGGGTCCAAGAAACGGTTCAGAACAAAGTTCACGCAGGAGCAAAAGGACAAAATGCTTGAACTTGCTGAAAAACTAGGGTGGAGGATTCAGAAACACGACGAGGGTGTGGTCCAAGCCTTCTGCAACGAAACTGGGGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 750 0.6107 MEFEDQEDQEEEQCMGAAAYDPTRVKLPLGPEAVMAAQPVRSTTNGGAGRARYRECLKNHAVGIGGHALDGCGEFMAAGTEGSLDALKCAACSCHRNFHRKESDGAGASVGVGDPYLVSHHPLHHGPPPQFAAYYRTPTGYLQVGGQARVAGTLALPSTSGGGGTQSTREDQEDISNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEGVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1203 249 SUPERFAMILY Homeodomain-like 174 247 IPR009057 -
Vra11g1203 249 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 242 IPR006455 -
Vra11g1203 249 MobiDBLite consensus disorder prediction 158 184 - -
Vra11g1203 249 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Vra11g1203 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Vra11g1203 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 248 - -
Vra11g1203 249 MobiDBLite consensus disorder prediction 154 189 - -
Vra11g1203 249 Gene3D - 171 247 - -
Vra11g1203 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 39 248 - -
Vra11g1203 249 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1203 Vra-Chr11 12780288 12781571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1203 49 245 ZF-HD Transcription Factor Family AT4G24660 54.315 2.17e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra11g1203 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1203 - - gmx:100808910 383.645