Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1190 ATGGAAGAAGCAATGAGGCGTCTCAACGGTGTGGCTCCGATTCTCGGACCCGACCCGAAAGACTCATCACTCGGTGAAAACCCTAAACGCTCCACCGCCGTTAACAAGCGGACTTTAAGAGAAGACGGCGGCGGCGGAGCCATGAGGTATCGTGGTGTGAGGCGCAGGCCGTGGGGACGTTATGCCGCCGAGATTAGGGACCCTCAGTCGAAGGAGCGACGGTGGCTGGGAACCTTCGACACCGCGGAGGAAGCTGCCTGCGCCTACGACTGCGCCGCCCGAGCCATGCGCGGTCTCAAGGCTCGCACCAACTTCGTGTACCCCACTTCTCCGCAAGCTTCTTCCGCCACAGCCGACCACTTCTTTCATTCTTTTAGTAATAACAACTTCACCAAACACTCTCCGTCACTACCCTTCACCAGCCACCGTAGTCGCCACTCGACTGGTTCCGCCAGCTGCTTTGACTACCCTAGCGCCGTTGACTTTTCCTTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACTCTTCCTCAAATAACCCTTCCTTGCTTTCTTCTTCCACCCACAACTTCCACGACCAGTTCTACAACAAGGGTTCTTCTACTTTTCCATCGTTACCAACTGTTTCTTCTTCTTCTTCTTCTTCACCTCTTATTCCTAGTTATTCGGTGAGTTACCCTTTGGAAGGCGCTTCGTCTGTTAATGTGAACACGGTATGTGGAACTAATTTCACTGAAAAAGGTGATGATGACAGTGGGTCTGGATTTTTCTGTCGAGAGTCTTCGGATTCCGGATTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAGCGAAGCCTAATAAATGCGAGAGTTTGCCAAAAATGGAGAGTGTCCGAAACCCTCAGGAGCCCGTTCTTCCTTCTCTTATTTCTGAATCAGCACTTGTTTCCACCGCGCAATGCTATGATGACACGAAGAAGGGGTTTCAGAAGAATGAGAGTTTCGGCCTTTCTTTCGATCATCAGGATCTTCCCATGCAGAAATTTGACAACTTTAATGGGTTTCATCACTTGCAGGGTATGGCTCTGGGGAATGAACAAACCATGACGAATCATGCAGAGAATTGCATCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTGCAATCAGGATGCAGAATGCTTAG 1206 0.4959 MEEAMRRLNGVAPILGPDPKDSSLGENPKRSTAVNKRTLREDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQASSATADHFFHSFSNNNFTKHSPSLPFTSHRSRHSTGSASCFDYPSAVDFSFSNPRNPSSSLNMLLLRDLINSSSNNPSLLSSSTHNFHDQFYNKGSSTFPSLPTVSSSSSSSPLIPSYSVSYPLEGASSVNVNTVCGTNFTEKGDDDSGSGFFCRESSDSGLLEEIVNKFLPKAKPNKCESLPKMESVRNPQEPVLPSLISESALVSTAQCYDDTKKGFQKNESFGLSFDHQDLPMQKFDNFNGFHHLQGMALGNEQTMTNHAENCIVEDVFQYQELLNSFAIRMQNA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1190 401 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vra11g1190 401 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Vra11g1190 401 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 401 - -
Vra11g1190 401 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Vra11g1190 401 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 401 - -
Vra11g1190 401 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Vra11g1190 401 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Vra11g1190 401 MobiDBLite consensus disorder prediction 33 49 - -
Vra11g1190 401 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Vra11g1190 401 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vra11g1190 401 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vra11g1190 401 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1190 Vra-Chr11 12443253 12444686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1190 1 286 AP2-EREBP Transcription Factor Family AT1G24590 38.206 6.37e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra11g1190 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1190 - - gmx:102669715 522.702