Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1185 ATGGTCCACAGCAATATACACACTCCTCTCAAGCTCCCACCGTTATCCCAACCCCATCTTCCTCTTCCCACGCGCTTCACCACCATGCCTCTTCTACTCGCTCGCACACCACCATCTTCACTTCCTCCAATCCTTCACCACCACCACTACAACAACAACAATAACCACCTTCTAATCGCACCTTCTCAGAAGCGCTTCCCTCTCATTGCAGGGCCAATTCTTCTTCCCCGGCGCATTCTTGCATCAACGCCTCTCAAGTGCGCCTCCATCAACGGAGTCCCCGTTCGTAACACTCCAGAAGCTTCCACAGAACAAGTCTACGCCGGCGAGTTACTTCAGAGGATTCGTAAATGGCTCGACTTTTTACCGTCGATACTTCCCGGCGGACGGTGGTGGGACTTCTCTGACGACGTTGACGTTCAGCTGGTGGCGCAGCCGGTGACCGTGTGGCGCGCGCTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTCATCATCGCTGCTTTCTCTGCTCTCATTGTTGCTGCTGTTTCGGAGATTTCTATTCCGCATTTCTTGACGGCGTCCATTTTCTCGGCACAGGGTGCTGACCTTGCTGTTTTTCATAGGAATGTGCGCTTGTTGGTTCTGTTGTGCGTGACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACGCTATACTCTTCTCTTCTACTGCAGGACATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGGGCTGATTGTCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGCTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGCTATGGAAGTTACCAAAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAATATGGAAGGTATAATTGGTGGCTAGGGAAATTAGCTGACATCAGCTTGCGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAATATCCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGGGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCCCCTAGCAGCCAATTCACAGAAAGAGGTATAAAGTTGCAGAGGTTAATGGGGTGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTTAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGGCTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACGAATGGTCAGATTTTGGTAGATGATATCCCTATTCAAGACTTGGACATAATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGTTTATGTCTTCAGGAAGATAAAATTCAGCGAATATATATTTCTTTTCTCTTACCAAAAATTGTTTGTACAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTAGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCCCATGACTTTATCTCAGCACTTCCCAATGGTTATGAGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATTCTTGATGAAGCCACAAGTGCACTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGATTGGAAGTCACAGGGAACTTCTCTTAAGAGATGGTTTATATGCACGGTTAACTAGGAAACAGGCTGATGCCATGGCATGA 2253 0.4443 MVHSNIHTPLKLPPLSQPHLPLPTRFTTMPLLLARTPPSSLPPILHHHHYNNNNNHLLIAPSQKRFPLIAGPILLPRRILASTPLKCASINGVPVRNTPEASTEQVYAGELLQRIRKWLDFLPSILPGGRWWDFSDDVDVQLVAQPVTVWRALGKMWELVARDRWVIIAAFSALIVAAVSEISIPHFLTASIFSAQGADLAVFHRNVRLLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYNWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILGGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFTERGIKLQRLMGCIEFLNVSFHYPSRPTVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDDIPIQDLDIMWWRERIGFVGQVYVFRKIKFSEYIFLFSYQKLFVQEPKLFRMDISSNIRYGCRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEIGSHRELLLRDGLYARLTRKQADAMA* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1185 750 Pfam ABC transporter transmembrane region 168 434 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra11g1185 750 CDD ABC_6TM_TAP 170 457 - -
Vra11g1185 750 Pfam ABC transporter 502 672 IPR003439 GO:0005524
Vra11g1185 750 Gene3D - 473 749 IPR027417 -
Vra11g1185 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 741 IPR027417 -
Vra11g1185 750 Gene3D ABC transporter type 1, transmembrane domain 150 470 IPR036640 GO:0005524|GO:0016021
Vra11g1185 750 PANTHER ABC TRANSPORTER B FAMILY 589 749 - -
Vra11g1185 750 PANTHER ABC TRANSPORTER B FAMILY 107 566 - -
Vra11g1185 750 ProSitePatterns ABC transporters family signature. 644 658 IPR017871 GO:0005524
Vra11g1185 750 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 168 449 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra11g1185 750 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 589 749 - -
Vra11g1185 750 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 107 566 - -
Vra11g1185 750 SUPERFAMILY ABC transporter transmembrane region 155 465 IPR036640 GO:0005524|GO:0016021
Vra11g1185 750 SMART AAA_5 510 721 IPR003593 -
Vra11g1185 750 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 483 744 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1185 Vra-Chr11 12344702 12361134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1185 238 748 Calmodulin-binding Proteins AT2G36910 32.887 1.51e-68 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1185 - - vra:106777591 1453.34