Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1174 ATGGCTTCTCTAACTTCTCTTCTCATTCCTCTTCTTGCAACTTCTTGTGTAACTGTAGCTGTGTTTTCCTTCCAAGCTTCTCTCAAAACAACTCACTTTGAACCGTTCAGATGCTCCTCCATGATCAGCACATGCAATGCCTCACTCTACCACATAAGTTACAATCACAACGCAGATGACTTAGCCAACTTTTACTCCGTTCACCCCTCCCAAATCAAACCTATAATGCGTGGCACAAAGCAAGATTACCTTATAACAGTCCCTTGTTCCTGCAATAGCTCCAATGACCTTGGCGGATATTTCTATGATACAACCTACAAGGTGAAGCCTAATGACTCTTCTGTGGAGATTAACAACATTGTTTACAGTGGTCAAGCCTGGTCTATTGACAGAGAAGTGAACCCAAACGAGGACTTAGCAATACATCTTCCTTGTGGGTGTTCAGAAAAAAAAGACTCCCAAATTGTTGTCACGTATACAGTTCAGCGGAATGATACACCCATATCAATCGCTACTCTGCTAAATGCTACCTTAGATGACATGGTGAGTATGAACGAAGTTCTGGTTCAGAACCCCTCATTCATAGATATTAGTTGGGTGCTGTATGTTCCAAGGGAACTCAATGGTTTGCCTTCCAAAGGAAAAGAAAAGAAACACTATATAATCATTGGCATCTTAGCGGGTGTGGCATTCTTTTCAACTATCACTTTGATCATTCTCGTTGTCGTTCTTAGGAGATCCAGGGCCAGTGTAGTCGCAAAAAATGATCCAAATATTGTGTCTAAAAGATCCATTGGAAATAGAACTATTTCCATAAAGGACTTTCATGCAGAACATATAGAAGATGCAACTCCATTTGAATCAGAAAGACCAGTAATTTATGCTCTAGAGGAGATTGAAGATGCTACAAATAACTTTGATGAAACGCGAAAGATTGGAGTAGGTGGATACGGGAGTGTGTATTTCGGAATGTTGGAGGAGAAGGAGGTTGCAGTAAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCCTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCCAGCGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGAGCACCTTCATGATCCATTACTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGGTTCAAATTGCATTGGATGCAGCAAAAGGTCTTGAATACATACATGATTACACGAAAGCTCGATATGTGCACCGTGATATAAAGACTTCCAATATTCTCCTTGATGAGAAGCTAAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTGGTTGGAACACCGGGCTACCTTCCACCAGAATCTGTTAAGGAGCTTCAAGTGACTATAAAAACAGATGTTTTTGCATTTGGGGTGGTTCTGTCAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACAACCAACAAGCCAACAATATGAAATCACTTGTTACAGTTGTTAGCCAAATCTTCGGAAATAAATACCCAGAGAATGTTTTAGCAGATGCCATAGATGGGAATCTTCAGCATAGCTATCCCATGGAAGATGTCTACAAGATGGCAGAAGTAGCTCATTGGTGTTTGTGCGAAGATCCAAACGACAGGCCTGTGATGAGGGAGATAGTTGTGGCATTGTCACAGATTGTTATGTCATCCACAGAATGGGAAGCATCATTAGGTGGAGACAGCCAAGTCTTCAGCGGGGTTCTTGATGGAAGATGA 1833 0.4152 MASLTSLLIPLLATSCVTVAVFSFQASLKTTHFEPFRCSSMISTCNASLYHISYNHNADDLANFYSVHPSQIKPIMRGTKQDYLITVPCSCNSSNDLGGYFYDTTYKVKPNDSSVEINNIVYSGQAWSIDREVNPNEDLAIHLPCGCSEKKDSQIVVTYTVQRNDTPISIATLLNATLDDMVSMNEVLVQNPSFIDISWVLYVPRELNGLPSKGKEKKHYIIIGILAGVAFFSTITLIILVVVLRRSRASVVAKNDPNIVSKRSIGNRTISIKDFHAEHIEDATPFESERPVIYALEEIEDATNNFDETRKIGVGGYGSVYFGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARVQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQQANNMKSLVTVVSQIFGNKYPENVLADAIDGNLQHSYPMEDVYKMAEVAHWCLCEDPNDRPVMREIVVALSQIVMSSTEWEASLGGDSQVFSGVLDGR* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1174 610 ProSiteProfiles Protein kinase domain profile. 306 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1174 610 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 19 610 - -
Vra11g1174 610 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 19 610 IPR044812 GO:0019199|GO:0045087
Vra11g1174 610 SUPERFAMILY Protein kinase-like (PK-like) 291 585 IPR011009 -
Vra11g1174 610 SMART serkin_6 306 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1174 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vra11g1174 610 Pfam Protein kinase domain 307 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1174 610 ProSiteProfiles LysM domain profile. 157 203 IPR018392 -
Vra11g1174 610 SUPERFAMILY LysM domain 157 204 IPR036779 -
Vra11g1174 610 Gene3D Phosphorylase Kinase; domain 1 285 377 - -
Vra11g1174 610 Gene3D LysM domain 150 209 IPR036779 -
Vra11g1174 610 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vra11g1174 610 Gene3D Transferase(Phosphotransferase) domain 1 378 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1174 Vra-Chr11 12165604 12169545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1174 286 610 Receptor kinase-like Gene Family AT1G51940 51.964 2.28e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra11g1174 Pkinase 2.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1174 - - gmx:100800907 1018.07