Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1164 ATGGATGAAATGTACGGAGTGCCGGACTACGCCGACAAGCCACTCATGACTCCGGAGAATCTGATTTTCCCTCCGGACTACCCCGCCTTCCTCACAGCCGCCCGGATTCCTATCTTCGGATCCGACGACCTCTTCTCCGGCGAGCCTTCCGCCGCTTCCGCCTCTCCTGCTGGAATTCCGCGCCACCAGGACGATGACGTCGCAACCACTGTCATGAAGGCAAAAATCGCCTCCCACCCTCACTACCCTCGCCTTCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTCTGTTGGAGGAAATCCGGCGAGAAAATGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTGAAGTATAAATCCGACTTGGCTCGCCCCTTTGACGAAGCAACCACTTTCCTCAACAAGATCGAAATGCAGCTAAGCCATCTCTGCACTGGCGCTTCTGTTTCCACCGTTTCTGATGATGGTGGTGTGTCTTCAGACGAAGATTTGAGTACAGGAGATGGTGATGGGCAAGATGGGCAATCAAAGGGTGAAGATCGTGAACTGAAGGATAGACTCTTACGGAAGTTTGGGAGTCACATTGGTACTTTGAAACTGGAGTTTTCAAAAAAGAAAAAGAAAGGTAAACTTCCGAAGGAAGCAAGACAAACATTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCCATGATGGAAAATCTTAACGGACGGTTCCTTGGTGATGAATGA 936 0.4979 MDEMYGVPDYADKPLMTPENLIFPPDYPAFLTAARIPIFGSDDLFSGEPSAASASPAGIPRHQDDDVATTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDDGGVSSDEDLSTGDGDGQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLGDE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1164 311 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
Vra11g1164 311 MobiDBLite consensus disorder prediction 179 209 - -
Vra11g1164 311 Pfam KNOX2 domain 124 170 IPR005541 GO:0003677|GO:0005634
Vra11g1164 311 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Vra11g1164 311 SMART HOX_1 230 295 IPR001356 GO:0003677
Vra11g1164 311 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 301 - -
Vra11g1164 311 Gene3D - 227 301 - -
Vra11g1164 311 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Vra11g1164 311 SMART ELK_2 208 229 IPR005539 GO:0003677
Vra11g1164 311 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
Vra11g1164 311 CDD homeodomain 240 292 IPR001356 GO:0003677
Vra11g1164 311 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Vra11g1164 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 301 - -
Vra11g1164 311 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Vra11g1164 311 SUPERFAMILY Homeodomain-like 229 300 IPR009057 -
Vra11g1164 311 Pfam ELK domain 208 229 IPR005539 GO:0003677
Vra11g1164 311 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1164 Vra-Chr11 11826932 11836291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1164 1 311 Homeobox Transcription Factor Family AT1G23380 67.781 1.16e-147 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra11g1164 KNOX2 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1164 - - gmx:100794719 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1458 7 31859903 31865797 Vra11g1164 11 11826932 11836291 PCT