Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1162 ATGGAGCTTAGTGGTTTGGTTTTCTGGCTACTGGGGTTGCTGCTTTTGCAGTTGATGGAGATTTCTTCTGCTGCTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGGGTGACTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGAATGGTTACGTGTTCCTCTGATGGCTCCGTTTCTGCATTGGGATTTCCGAGTCAGAACTTGTCTGGTACACTATCTCCCGGAATTGGAAACCTCACTAACTTGCAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAGGATTCCTGCTGCAATAGGAAACTTGGAAAGGCTTCACACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGGTTAAACAATAACAGCCTTACAGGATCCTGTCCTCAGTCTCTTAGCAACATCGAAGGTCTAACCCTTGTGGACCTCTCCTACAACAATCTGAGTGGTTCATTGCCTAGAATATCGGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCCGTTTTACCAGAGCCACTTTCCTTTCCTCCAGATGCACTAAGAGGCCAATCAGATTCTGGTAAAAAAAGCCATCACGTGGCACTTGCTTTCGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGATATAGACGCAACCAGCAGATATTCTTTGATGTTAACGAACATTATGATCCGGAGGTGCGTCTTGGTCATTTAAAAAGGTTTTCATTCAAAGAGCTTCGAACTGCAACAGACCATTTCAACTCAAAGAACATTCTTGGAAGAGGTGGCTTTGGAATAGTCTACAAGGCATGCCTAAATGATGGGTCTGTTGTGGCTGTTAAGAGGTTAAAGGACTACAATGCAGCCGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATCAGTTTGGCTGTCCACCGCAATCTTCTCAGGCTTTCGGGGTTTTGCAGCACTCAGCATGAAAGGCTCCTCGTTTATCCATATATGTCTAATGGAAGTGTAGCCTCTAGATTAAAAGATCATATCCATGGCCATCCGGCGTTAGATTGGACTAGACGGAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTACTTGCATGAACAATGTGACCCTAAGATTATTCACCGTGATGTAAAAGCAGCTAACATATTGCTAGATGAAGACTTTGAAGCTGTTGTTGGTGATTTTGGTTTAGCCAAGCTTCTGGATCATAGAGACTCCCATGTGACCACCGCCGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTATCTATCCACTGGCCAATCGTCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTGGACAAAGATCTAAAGGGAAACTTTGATCTGATTGAGTTAGAAGAAATGGTTCAGGTTGCACTCTTGTGCACACAGTTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTGGCTGAGAGATGGGAGGCCTCACAGAGGATTGAAACACCAAGGTTTCGGTCTTGTGAGCCTCAAAGATATTCAGATTTAATAGAGGAATCTTCACTCATAATTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1872 0.4391 MELSGLVFWLLGLLLLQLMEISSAALSPSGINYEVVALMAIKGDLTDPHNVLENWDSSSVDPCSWRMVTCSSDGSVSALGFPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGRIPAAIGNLERLHTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRFSFKELRTATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMSNGSVASRLKDHIHGHPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIIEAMELSGPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1162 623 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Vra11g1162 623 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Vra11g1162 623 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Vra11g1162 623 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1162 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 623 - -
Vra11g1162 623 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Vra11g1162 623 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
Vra11g1162 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vra11g1162 623 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Vra11g1162 623 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 623 - -
Vra11g1162 623 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1162 623 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vra11g1162 623 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1162 623 SUPERFAMILY L domain-like 32 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1162 Vra-Chr11 11666993 11673069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1162 67 623 Receptor kinase-like Gene Family AT1G60800 76.667 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra11g1162 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1162 - - gmx:100806943 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1162 11 11666993 11673069 Vra7g3490 7 54244315 54248499 PCT