Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1150 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGCACCACTATATTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAGGACTTTGAACAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAGTAATATTGTGAATAAACCTCCGGAGAAGAGACAGCGAACGCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAAGAAGCATTTAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTGAATGAAGAAGATGATCAAGGTTTCCGTGGAAGAAAGGTCCAAAGGAACTCCATCTTTGAAAGGACACCATTTGAGTGA 654 0.4312 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANRTLNSHSASLMTYSDCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDDQESCSQTDQLVDLDSQVDPPDAEVNEEDDQGFRGRKVQRNSIFERTPFE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1150 217 MobiDBLite consensus disorder prediction 161 181 - -
Vra11g1150 217 PANTHER AXIAL REGULATOR YABBY 4 1 182 - -
Vra11g1150 217 SUPERFAMILY HMG-box 109 162 IPR036910 -
Vra11g1150 217 MobiDBLite consensus disorder prediction 161 217 - -
Vra11g1150 217 Pfam YABBY protein 11 163 IPR006780 GO:0007275
Vra11g1150 217 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Vra11g1150 217 MobiDBLite consensus disorder prediction 194 210 - -
Vra11g1150 217 Gene3D High mobility group box domain 111 172 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1150 Vra-Chr11 11422835 11425586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1150 2 217 C2C2-YABBY Transcription Factor Family AT1G23420 60.088 2.12e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vra11g1150 YABBY 1.1e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1150 K25796 - gmx:100806755 385.571