Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1146 ATGGCTCATAACTCAGAGAACAGCAGCACCTGCTTTCATGATGATTTTGAATGTGATGAAGCGGATGATTCTAGAATCTTTCATTGCTGGAACCACCGGAAGCTTGACTCTGGATATGAGGATGGTGGTGGATCGGAGGAATTAGCATGTGCTGTGCCCCAGAGTGAGGAAACTGTGAGGGCTATGGTGGCGAGAGAGAGGGAGCATTTCCCGAGGGTTGATTACTTGCAGAGACTAAGGAGCGGGAAGTTGGACTTGGGTGTCAGGAGGGACGCACTTGATTGGATTTGGAAGGCTCATGCTTATTTTGGCCTTGGACCCTTGAGTTTTTGTTTGGCTGTGAACTACTTGGATCGTTTCCTATCGGTTTTTGACTTACCGAAAGGTGTAAGTTGGACTGTGCAATTGTTAGCTGTAGCGTGCTTATCAATTGCAGCTAAAATGGACGAGATTAGAGTGCCTCAATCTGTAGATTTACAGGTTGGGGAACCAAAGTTTGTGTTTGAAGCTAAAACCATTAAAAAAATGGAACTACTGGTCTTAAGCAAGTTGAGATGGAAAATGTATGCATTAACTCCTTATTCCTTCATAGAATACTTCCTTAGCAAGATCACTTGTGAGAAGCACCCAACAAAATCATCCATTGCAATATCAGTGCAGCTCATCCTCCGTATAATCAGTGGTATCGACTTCTTGGAATTCCGGCCTTCTGAAATTGCTGCTGCGGTGGCAATTTCTGTTTTAGGAGAATCACAAGCGAAAGATATGGATAAGTCCATTGCTGATCTCTTTATAGTAGAGAAGGGTAGAGTTCTAAAGTGTGCTGAATTGATAAGAGATTTGTCCTTGAACAATGTTGCTGCTAGTGTAGGAAGCAAGGTGCCAGATGTGCCTCAAAGTCCTATGGGTGTGATGGATGCCACTGGGTGTTTAAGTTATAAGAGTGATGAATTAACAGTTGGATCATGTTTAAATTCTTCACATGATAGTCCAAGTCCAAACACTAAGAGTAGTAAAGCAGAAGGACCTTCTAACGAACCTCCAAGTGATGAAATGTGA 1059 0.4287 MAHNSENSSTCFHDDFECDEADDSRIFHCWNHRKLDSGYEDGGGSEELACAVPQSEETVRAMVAREREHFPRVDYLQRLRSGKLDLGVRRDALDWIWKAHAYFGLGPLSFCLAVNYLDRFLSVFDLPKGVSWTVQLLAVACLSIAAKMDEIRVPQSVDLQVGEPKFVFEAKTIKKMELLVLSKLRWKMYALTPYSFIEYFLSKITCEKHPTKSSIAISVQLILRIISGIDFLEFRPSEIAAAVAISVLGESQAKDMDKSIADLFIVEKGRVLKCAELIRDLSLNNVAASVGSKVPDVPQSPMGVMDATGCLSYKSDELTVGSCLNSSHDSPSPNTKSSKAEGPSNEPPSDEM* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1146 352 Pfam Cyclin, C-terminal domain 192 287 IPR004367 -
Vra11g1146 352 PANTHER CYCLINS 54 335 IPR039361 -
Vra11g1146 352 PANTHER CYCLIN-D4-1-LIKE 54 335 - -
Vra11g1146 352 SUPERFAMILY Cyclin-like 50 188 IPR036915 -
Vra11g1146 352 Gene3D - 61 276 - -
Vra11g1146 352 Gene3D - 72 189 - -
Vra11g1146 352 CDD CYCLIN 89 181 IPR013763 -
Vra11g1146 352 SMART cyclin_7 94 182 IPR013763 -
Vra11g1146 352 Pfam Cyclin, N-terminal domain 60 189 IPR006671 -
Vra11g1146 352 MobiDBLite consensus disorder prediction 322 352 - -
Vra11g1146 352 MobiDBLite consensus disorder prediction 322 344 - -
Vra11g1146 352 ProSitePatterns Cyclins signature. 89 120 IPR006671 -
Vra11g1146 352 SMART Cyclin_C_2 191 313 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1146 Vra-Chr11 11349913 11352527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1146 54 259 Core Cell Cycle Gene Families AT5G65420 59.615 1.31e-85 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1146 K18810 - gmx:100794010 503.056