Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1141 ATGCAACATCTTCAAAGTTACTATAACTCAGAAGCTAAAATGATAAGAGGTGGGTTTCCTCGGCCATTCATTTCAAGGACATACCAAACCAGTTTCTTGAAGCAAAGATCAAAGACAGAGATAAAAGTTGTAGCCGCAAAGAAACACAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAACTATCCTTCCCAACTTGATCAAACATGGTGAATTAGATTTTGTTATGAACCATCAGAAGGACAAGGCATCAGTGTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCAGAAGTGGAACAAGATAGGTGTGGTAACTCATCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAGGTTGGAAAAATGTAATAATGAGGAGGACCTGGTGAAGGCCACATTGAGTTGCGAGGATAGTCTGGGATTGATGTCTGCAATATCAAGGGCAATGGAGTCAGTGAAAACCAAAGTGGTGAAGGCTGAGATAGTGAGTGTGGGAGGGAGAAACAGAAGTGTGTTGTGGGTGCAAGGTCTTGGGAATGATCGTATGGGGATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGCCGTTCTACTCACTAA 666 0.4294 MQHLQSYYNSEAKMIRGGFPRPFISRTYQTSFLKQRSKTEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKHGELDFVMNHQKDKASVLAETIKQVKELKKKVSEVEQDRCGNSSKDVVKFPSGADRLRLEKCNNEEDLVKATLSCEDSLGLMSAISRAMESVKTKVVKAEIVSVGGRNRSVLWVQGLGNDRMGMLKSSLKIAMHKPAFKMRRSTH* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1141 221 PANTHER TRANSCRIPTION FACTOR BHLH131 4 216 - -
Vra11g1141 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 113 IPR036638 GO:0046983
Vra11g1141 221 Gene3D - 44 115 IPR036638 GO:0046983
Vra11g1141 221 SMART finulus 50 110 IPR011598 GO:0046983
Vra11g1141 221 Pfam Helix-loop-helix DNA-binding domain 48 104 IPR011598 GO:0046983
Vra11g1141 221 Coils Coil 94 114 - -
Vra11g1141 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 104 IPR011598 GO:0046983
Vra11g1141 221 PANTHER TRANSCRIPTION FACTOR BHLH30 4 216 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1141 Vra-Chr11 11263647 11264583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1141 43 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 36.424 1.08e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g1141 HLH 6.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1141 - - gmx:102667782 299.671