Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1135 ATGGCGAGGGAGAAGATTCAGATTAGGAAGATCGACAACGCCACCGCCAGGCAGGTTACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCCGAGGAGCTTTCCATTCTCTGTGATGCTGATGTTGCTCTCATAATCTTCTCTTCTACTGGGAAACTCTTTGAGTACTCAAGCTCCAGCATGAAGGAGATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAAGATGGAACAGCCATCTCTCGAGTTGCAGCTGGTTGAAAACAGCAACTGCACCAGATTGAGCAAGGAAGTTGCCGAGAAGAGCCATCAACTGAGGCAGCTAAGAGGAGAGGATCTTCAGGGTCTAAACATAGATGAATTGCAACAGCTGGAGAGGTCTCTAGAAACTGGATTGGGGCGTGTGATAGAAAAGAAGGGAGAGAAAATTATGGAAGAGATCGCTGATCTCCAAAGAAAGGGAATGGTATTGATGGAAGAGAACGAGCGACTAAAACATCACGTGGCGGGCATGGTTAATGGTCAAAGACGTTGTGGTGTGGAATCTGAGAACATTGTTATGGATGAAGGTCAGTCTTCAGAGTCTGTCACCTACGTTTGCAATTCTGCAGGACCTCCGCAGGACTATGATGAAAGCTCAGATACGTCCCTCAAACTGGGGCTGCCATACTGCGGTTGA 687 0.476 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSILCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLAKMEQPSLELQLVENSNCTRLSKEVAEKSHQLRQLRGEDLQGLNIDELQQLERSLETGLGRVIEKKGEKIMEEIADLQRKGMVLMEENERLKHHVAGMVNGQRRCGVESENIVMDEGQSSESVTYVCNSAGPPQDYDESSDTSLKLGLPYCG* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1135 228 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Vra11g1135 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Vra11g1135 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra11g1135 228 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra11g1135 228 Coils Coil 94 114 - -
Vra11g1135 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vra11g1135 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vra11g1135 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vra11g1135 228 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1135 Vra-Chr11 11109825 11114923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1135 1 228 MADS-box Gene Family AT2G22540 69.710 4.20e-112 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra11g1135 K-box 2.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1135 - - gmx:100789126 399.823