Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1132 ATGGCTCTTCCTGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGGCTGCAATAAACATTCGAGGGCAACGGGACATGGCAAGTTACATTTATTTAGGGCAGGTCTTTCATATTCTATTTCGCTCATGAGACAGGAATGTGGGGGTTTTCAATACCTTCGTCATATAAACAAGCCAACACATACATTATCGGGCAAGGGCCGATCTTTTAAGTGTCATTGTCTTTTAGTGCCAGGCCAACCAAATGATCTTCCTGCTGTTAAGGCAGCTGTTACCGTGTTGGCTAGGTCTAGTAATTTGTTACAAAATAATCCTATCATAGTGAAGTTGATTCCTGCAATTGGCGTTATCATTTTTGCAATATGGGGTGTTGGTCCATTATTGTTCCAAACAAGGAAAATACTCTTCCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCACTATATAGTAACTTCTTACCTTCGACCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATTCTACCTTCAGAACCTGGTCAAGTTGTTAAGGACCGGTTGCTGAATTTTGTGAGATCATTGTCAACGGTTCTGGCCTTCGCCTATTGTTTGTCAAGTGTAATTCAACAATCACAGAAATTCTTTGCGGAGGCTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTATTCTGCAGTATGGATAGCAGCGTTTTCATTGTTCATGGAATTATTAGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGCTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTCGAGCATGTTGGCTGGTGGTCGCCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAATCTTAGTCAAAAAACACATTGGCGAATCAAAACTCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAGGTATTGGCCAAAAATCCTCAAGTTGAGCAGCAGAGACTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGGAAGCAATACTGCTAGATCTTCTTAGAGTTATAGGCCATCACCGAGCCAGACTTGCAACACCGGTCCGTACCCTGCAGAAAGTATACAGTGATGCTGACCTGGATAATATACCGTTTGCAGATTCCACATTTGGTGGTGGTCCAGTCACAGTACCTAACCGCCCATTATTAGTGATTGAACCATCTTACAAAATCAATGGAGATGATAAGATGAAAAGTCGATCTGCACGACCAGTTGTTGATCAAGATAATAAGACATCGAACTCTGATGCAAATGGAAACTCTAAGACACTTGTGACATCTAATTCTGACACAAATGGAAAGACAGTTGTGACACCCAAACCCGATCCAGAAGTGGGTGAGAACAAGCCACTGAAAGTAGATTCAAACAAGGAAAACGTGGAGGTTCCAGAATCTTCTAAATCTAAAGTATCTGGTTCGGTAGTAGAAAATTCAGCCCAGAAGGACATAGATTCCAAGCAATCCAAGGGTCAGACCACTAAAAACATAAAGCCAAATATTGAGTCTGAGAATGTAGTGCCGTCCTCATCTAACAGTGCTGACAAAACTGGTGGACTTAATGCTAATATAGCATCAAAACCGCAAGGAGAAAAGAAACCTGCTGCACAGCCTCAAGCATCCAGGACTGTTCTTGAAGAAAATATAGTACTAGGTGTTGCGTTGGAAGGATCAAAGAGGACCCTTCCCATTGATGAGGAGATTGACAATGTAACATCTCGAGAGGCAAAGGAAATGGCTGCATTCCAGGGTGGAAATGGACCTCCAAAGGCTCTAGATGGAAATGACTAG 2106 0.4174 MALPGSLQLSHGLGLCRNLGCNKHSRATGHGKLHLFRAGLSYSISLMRQECGGFQYLRHINKPTHTLSGKGRSFKCHCLLVPGQPNDLPAVKAAVTVLARSSNLLQNNPIIVKLIPAIGVIIFAIWGVGPLLFQTRKILFQRSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRALEPLILPSEPGQVVKDRLLNFVRSLSTVLAFAYCLSSVIQQSQKFFAEATDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKVYSDADLDNIPFADSTFGGGPVTVPNRPLLVIEPSYKINGDDKMKSRSARPVVDQDNKTSNSDANGNSKTLVTSNSDTNGKTVVTPKPDPEVGENKPLKVDSNKENVEVPESSKSKVSGSVVENSAQKDIDSKQSKGQTTKNIKPNIESENVVPSSSNSADKTGGLNANIASKPQGEKKPAAQPQASRTVLEENIVLGVALEGSKRTLPIDEEIDNVTSREAKEMAAFQGGNGPPKALDGND* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1132 701 MobiDBLite consensus disorder prediction 571 629 - -
Vra11g1132 701 Gene3D - 195 297 - -
Vra11g1132 701 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Vra11g1132 701 Gene3D - 299 354 IPR023408 -
Vra11g1132 701 MobiDBLite consensus disorder prediction 512 542 - -
Vra11g1132 701 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 701 IPR045042 -
Vra11g1132 701 MobiDBLite consensus disorder prediction 551 570 - -
Vra11g1132 701 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Vra11g1132 701 MobiDBLite consensus disorder prediction 499 648 - -
Vra11g1132 701 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1132 Vra-Chr11 11035373 11044737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1132 9 693 Mechanosensitive Ion Channel Family AT5G10490 58.671 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1132 K22047 - gmx:100796304 1185.24