Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1126 ATGGATGCAATCCAAACAGAGAAAGTTTATGTTGCTGTTGGTAATGATGCACAGGATGGATTTAAGGCTTTGAATTGGGCTCTAAAGAAATGGAATTCTCATCCAATTTCCGTTGTTATTCTCCATGTCACACATAATACTCCCATGGATTATGTCTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAAGAGAAAATCAACAAGCTGTTTTCCAAGTATGTTGCTTTCTGTGGCAAGGTGCCAGCAGAGATTCTTCAAGTTGAGAAATCTGATGAACCAATGCAAAAGCGAGTCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTGATGGGATTTTCATTCATGAAGCCCTCCATGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGCGAACTGTTCATTATTTGTGGAGGGAAGCAAATTTTCCTGAGAGGTAAAAATGATGAGAAAATCATGGAGGATGATCATGGAGTCATGGTTGCGAGAATAAGAGATAAGATAACCTTCAAAGATTGGTTAGACAAATGGTTCAATGACAAAACCCAGGATTCTCCGGATAAAAGTGAATCACTTTCCTCAAGCAATTTGGAGTCCCCGGTGACCAGAAACCAGTGGGAAATTTACCTGCAGGAAATTGAAAATTATTATCAAGAATTGTTGTCTTCCAAGTTGGAGGAAGGAAACTGCGAGCTAGATAATGACGACTCACAGATTGGTCCAAACGAGCCACATGTCACTGAACACAACAATTATAATATGAGTGGTGCAGAGAAAATTGAAATCCTGAAAAGTCAGCTGAATGAAGCTCAGAAGACCATTCTATTGAAGAGGAAAGAGGCCAAAGATAGTAAAGAAAGGCATGCAAAAGCTGAATGGGCAATTTGTCTATGCAACAGTCGGGCTGAAGAGGTGGAAGGTCGAATTCGAGAAGAGGTGAGTGCTAAGGAGGAGCTAAAGAAGGAATGGGAAGCGGAGAGAGAGCAGACGGAGGAGATGAGAATGGAGGTGGAAGAAAGGAGGAGGAGGCTCAGTTCCCTGATGGAGGTGCAATCGGAGCTCTCCAACAGACTTCAAATATGGACGCTGGCCAAGACGCGGGCGGAGACGCAGCTCGAGAGGGCGGTAGGGGAGAGAACGGAGATGGTGAGGGAGATCGAGGAGCTCAGGCGCCAGAGAGACGTGCTTAACCGAAGGATCGAGTTCTGCAAGCAGAAGGACGCAATTGGAATGGCCGCCAGGCTCGCCGACACGCGCTGCACCTTCCGCGAGTACACGGCGGAAGAGATCCGGTTGGCCACCGACAACTTCTCCGAGCGGCTGAGGTTGAAGTCCGGCGGAGATTGGAGCAATGTTTACCGGGGACGCTTCAACCACTCCACTGTTGCCATCAAGATGCTCCCTTCTTTCTCCCTCCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATTAGGCATCCTCATCTGATTGCCATGGCGGGGTTTTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGCGCCACGGAAGCTTAAGAGACATGCTGTTTTCTAGGAGAAGAAACCGCGTTTTAAGATGGTACGACCGAATACGAATTGCCACAGAAGTTTGTTCAGGCCTGGGCTTTCTCAATGGAGCTGAACCAAGGCCCGTCATTCACTGCCATTTGACCCCATCGACAGTCCTCCTAGACCGCAATTTGGTGGCAAAGATCACGGGCTTTGGGCTCCACGATTGCCGTGACGAACAGTGTAACGTAGAGTCAGATTTGCAGGCTATGGGGGTTTTGCTGATGCATCTTTTAACAGGAAGAAATTGGGCCGGGCTGGTTGAGGAGGTGATGACTGTGGATATGGACAGAGAGGCTTTGGCTAGCGTTCTTGATGAGATGGCTGGGCAATGGCCATTGGATCTAGCAATAGAACTTGCAGGCCTGGCTTTGATGTGCGTGTCCACCAAAAGCAAGACTAACAGCTCAGAACTGAGCATTGCAAAGGTCTTAGAGGAACTGAATGAGATAAGGAGAAAGGGGGATGAAATAGTTGGAAGGGAAGGACGAAAGGCAATTATTGGTGGGTGTGTAGATAGAGAGGGAACCAGTGATGTGCCTAGTGTTTTTCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACACTTGGCAGCAGATGGGTTTTCTTATGAGCTTGAAGCAATAGACCACTGGCTGCAATCGGGGCGAGACACATCACCAATGACAAATCTGAGGCTGAAACACACATTCCTCACCCCGAATCACACTCTCCGTTCCCTAATTGAGGATTGGCAGACCAATAAACCACCTAAACTTACACACTAA 2415 0.4675 MDAIQTEKVYVAVGNDAQDGFKALNWALKKWNSHPISVVILHVTHNTPMDYVYTPFGKLPARSVSEEKLQILRKDEQEKINKLFSKYVAFCGKVPAEILQVEKSDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGKQIFLRGKNDEKIMEDDHGVMVARIRDKITFKDWLDKWFNDKTQDSPDKSESLSSSNLESPVTRNQWEIYLQEIENYYQELLSSKLEEGNCELDNDDSQIGPNEPHVTEHNNYNMSGAEKIEILKSQLNEAQKTILLKRKEAKDSKERHAKAEWAICLCNSRAEEVEGRIREEVSAKEELKKEWEAEREQTEEMRMEVEERRRRLSSLMEVQSELSNRLQIWTLAKTRAETQLERAVGERTEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLADTRCTFREYTAEEIRLATDNFSERLRLKSGGDWSNVYRGRFNHSTVAIKMLPSFSLQHFQSKVRLLGDIRHPHLIAMAGFCSEPKCIVLEYMRHGSLRDMLFSRRRNRVLRWYDRIRIATEVCSGLGFLNGAEPRPVIHCHLTPSTVLLDRNLVAKITGFGLHDCRDEQCNVESDLQAMGVLLMHLLTGRNWAGLVEEVMTVDMDREALASVLDEMAGQWPLDLAIELAGLALMCVSTKSKTNSSELSIAKVLEELNEIRRKGDEIVGREGRKAIIGGCVDREGTSDVPSVFLCPILQEVMKNPHLAADGFSYELEAIDHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIEDWQTNKPPKLTH* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1126 804 Gene3D Transferase(Phosphotransferase) domain 1 447 710 - -
Vra11g1126 804 Coils Coil 326 371 - -
Vra11g1126 804 PANTHER OS02G0152300 PROTEIN 5 797 - -
Vra11g1126 804 SMART Ubox_2 731 794 IPR003613 GO:0004842|GO:0016567
Vra11g1126 804 Coils Coil 396 430 - -
Vra11g1126 804 ProSiteProfiles U-box domain profile. 727 801 IPR003613 GO:0004842|GO:0016567
Vra11g1126 804 Pfam U-box domain 728 797 IPR003613 GO:0004842|GO:0016567
Vra11g1126 804 Coils Coil 284 311 - -
Vra11g1126 804 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 797 - -
Vra11g1126 804 CDD RING-Ubox_WDSUB1_like 732 773 - -
Vra11g1126 804 ProSiteProfiles Protein kinase domain profile. 462 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1126 804 SUPERFAMILY RING/U-box 725 798 - -
Vra11g1126 804 Pfam Protein tyrosine and serine/threonine kinase 471 606 IPR001245 GO:0004672|GO:0006468
Vra11g1126 804 SUPERFAMILY Protein kinase-like (PK-like) 445 656 IPR011009 -
Vra11g1126 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 801 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1126 Vra-Chr11 10922613 10926848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1126 7 803 U-box Gene Family AT5G65500 49.630 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra11g1126 PK_Tyr_Ser-Thr 1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1126 - - gmx:100786771 1350.11