Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1125 ATGGCACGTGCCACTAACTGGTTATCGTTCTCCCTCTCCCCCATGGAAATGCTCCGAACCTCCGAACCTCAGTTCGTGCAATACGATGCCGCTTCTGCAACTAACTCGCATCACTACTTTCTCGATAACTTGTACACCAACGGGTGGGGAAACGGGAACCTCAAACCTCAGGTGCTGATGGACCAGAATCTGAACCAGAGCGACGTCAGTTTTGTCGAATCCTCGCAGTCCCAAAGCGTCAGCCACGCGCCACCGCCCAAGCTTGAGGACTTTCTGGGTGACTCCTCCGCGGTGATGCGCTATTCAGACAGCCAGACGGAGACGCAGGACTCGTCGCTGACTCACATGTATGACCACCATGGCTCTGCATACTTCGGAGACCAGCAGGATCTCAAGGCCATTGCTGGGTTTCAAGCTTTTTCTACCAACTCTGGCTCCGAGGTTGATGATTCCACCTCCATTGGGAAAACTCAACCCAGTGAGTTTGGGACTCACTCTATTGAGTCTTCTGGGAACGAGTTCGCCGCGTTTTCTGGTGCCCCCACTGGCACTCTCTCGCTTGCTGTCGCCCAGAGCTCCGAGAAGGCCGTGGTGGCAGTAGATTCCGGTAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGAGGACTTCTATTTACAGAGGTGTCACCAGGCACCGATGGACAGGTAGATATGAAGCGCATCTATGGGACAACAGTTGCAGGAGGGAGGGTCAAGCCAGGAAAGGGCGTCAAGTTTATTTGGGTGGATACGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAAGTGGAGGAGATGAAGCATGTAACCAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGTGGATTCTCTAGGGGAGCTTCGATATACAGAGGTGTCACAAGACATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACCGAAGAGGAAGCAGCGGAGGCATATGACATTGCAGCAATAAAGTTCAGAGGTGCAAATGCAGTAACAAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCAGTGGGTGGGGCAGCGAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGCAGAATCCACCGTGTGGAAGCATAAACTTCTCGGCCATTCATCAGCCTGTTGCTTCAATCCCTTGTGGAATTCCCTTTGATTCTTCAACAGCATATTATCATCACAATCTTTTCCAACATTTTCATCCGACCAACGCTGCCACGGCAGTTTCCACCGTCACTTCCGGCAATGTAACTGGGCTTACCGCACTACCTCCACCGGCGACAACAGCAGCTGAGTTCTTTATCTGGCCTCACCAGTCTTATTGA 1503 0.5083 MARATNWLSFSLSPMEMLRTSEPQFVQYDAASATNSHHYFLDNLYTNGWGNGNLKPQVLMDQNLNQSDVSFVESSQSQSVSHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFGDQQDLKAIAGFQAFSTNSGSEVDDSTSIGKTQPSEFGTHSIESSGNEFAAFSGAPTGTLSLAVAQSSEKAVVAVDSGSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKEVEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQQNPPCGSINFSAIHQPVASIPCGIPFDSSTAYYHHNLFQHFHPTNAATAVSTVTSGNVTGLTALPPPATTAAEFFIWPHQSY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1125 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 497 - -
Vra11g1125 500 CDD AP2 319 378 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 ProSiteProfiles AP2/ERF domain profile. 218 284 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 ProSiteProfiles AP2/ERF domain profile. 320 378 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 SUPERFAMILY DNA-binding domain 319 379 IPR016177 GO:0003677
Vra11g1125 500 SMART rav1_2 218 290 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 SMART rav1_2 320 384 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 CDD AP2 217 286 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 497 - -
Vra11g1125 500 Pfam AP2 domain 218 276 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 Pfam AP2 domain 320 370 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 Gene3D AP2/ERF domain 320 380 IPR036955 GO:0003700|GO:0006355
Vra11g1125 500 Gene3D AP2/ERF domain 218 286 IPR036955 GO:0003700|GO:0006355
Vra11g1125 500 SUPERFAMILY DNA-binding domain 217 286 IPR016177 GO:0003677
Vra11g1125 500 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Vra11g1125 500 PRINTS Ethylene responsive element binding protein signature 360 380 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1125 Vra-Chr11 10899350 10904169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1125 69 500 AP2-EREBP Transcription Factor Family AT5G10510 60.311 1.09e-179 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vra11g1125 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1125 K09285 - gmx:100777168 832.787