Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1124 ATGGCATTAGCGCGTAATAACGCAAAAGAGTTTATGAGCGATGGCGACGGATCTCCTAGGGCGATTCTGGAAACCCCTGTTTCGGAAACAGAGTCCGAGACAGATTCGTCGATGGATAGCGGAAAAGAGGGTTACCTGATGCCATGGAAGTCTATGGTTGACGTTTTCAAGTTCAAGTCTGTGCGAAAATTAACTTCCATTCCTTTGCTTTCGGTGAGCCATGATATCTCTCGGAAGGGTTTGACCAAAAAACTGGCTCGTATTCGAAGTGCGGAAGACAGTATCGATATTGGAGATATTCCCGCGAAACCCTCTTGGAGAAACTTTGATTATGAAGAGTTAGCAGCTGCTACTAAAAATTTCAGTGCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTGTACAAAGGGTGTTTACCTGATGGTCAAATTATAGCTGTGAAGAGGCTAATGAAGAATGAAAAGGACGCTGCAGATAGAGCTGGAGATTTTTTGACAGAGCTTGGGATTATTGCACACATAAACCACACAAATGCAACACACCTTGTTGGGTTTGGGGTTGATGGCGGCCTCTTCTTTGTCCTGCAATTAGCTGCGCATGGAAGTCTCAGTTCTTTGCTTTTTGGTTCTGCAGGCATGGACTGGGAAAAACGATTCAAGGTAGCTGTTGGAGTGGCTGAGGGATTGCATTATCTCCACAAAGAGTGTCCAAGGCGAATCATTCATAGGGACATCAAGGCCTCCAACATCCTACTAAACGAAAACTACGAAGCTGAGATTTCAGATTTTGGACTGGCAAAATGGCTTCCAAACAAGTGGGCCAACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCGGAGTATTTTATGCATGGAATTGTGGATGAGAGAACTGATGTATTTGCATTTGGAGTTTTGCTGTTGGAGCTCATAACTGGCCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTGACTTGGGCGAAGCCACTGTTAGACACAAACAATGTAAAGGACATAGCAGACCCCAGATTAGGAGAGGCGTATGACCGTACAGAAATGATACGTGTGATGGTGACAGCTTCGATGTGTGTCCACCATGCATCCTCCAAAAGGCCATTCATGAACAAGGTTGTGCAGCTGCTAAAGGGTGAAGAGGCAATTATAGACATTAAGCAGAATTCAATTGAACCAAAATCTCAATTGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACCTGAAGGACATGAGTCGCCACATGCAACTGATCATGGAGTGA 1308 0.4465 MALARNNAKEFMSDGDGSPRAILETPVSETESETDSSMDSGKEGYLMPWKSMVDVFKFKSVRKLTSIPLLSVSHDISRKGLTKKLARIRSAEDSIDIGDIPAKPSWRNFDYEELAAATKNFSAENLVGKGGHAEVYKGCLPDGQIIAVKRLMKNEKDAADRAGDFLTELGIIAHINHTNATHLVGFGVDGGLFFVLQLAAHGSLSSLLFGSAGMDWEKRFKVAVGVAEGLHYLHKECPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNKWANHVVFPIEGTFGYLAPEYFMHGIVDERTDVFAFGVLLLELITGRRAVDSDSRQSLVTWAKPLLDTNNVKDIADPRLGEAYDRTEMIRVMVTASMCVHHASSKRPFMNKVVQLLKGEEAIIDIKQNSIEPKSQLLEACDLEDYTCSSYLKDMSRHMQLIME* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1124 435 Pfam Protein kinase domain 123 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1124 435 ProSiteProfiles Protein kinase domain profile. 121 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1124 435 SMART serkin_6 121 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1124 435 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Vra11g1124 435 Gene3D Phosphorylase Kinase; domain 1 97 196 - -
Vra11g1124 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vra11g1124 435 PANTHER OS08G0249100 PROTEIN 6 435 - -
Vra11g1124 435 MobiDBLite consensus disorder prediction 1 41 - -
Vra11g1124 435 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 6 435 - -
Vra11g1124 435 SUPERFAMILY Protein kinase-like (PK-like) 105 390 IPR011009 -
Vra11g1124 435 Gene3D Transferase(Phosphotransferase) domain 1 200 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1124 Vra-Chr11 10875408 10880050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1124 109 384 Trihelix Transcription Factor Family AT1G68690 45.263 8.51e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra11g1124 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1124 - - pvu:PHAVU_002G146300g 776.933