Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1109 ATGGTTTCACAAGCAGAGACAGAGCATCCCAACAAAGCATTTGGATGGGCAGCAACCGACACTTCTGGCATTCTCTCCCCTTTCAATTTCTCCAGAAGGGCAACAGGAGAGAAAGATGTTGCAATTAAAGTAATGTACTGTGGAATATGTCACTCAGACTTACATATGTTAAAGAATGAGTGGAACTGTTCTATCTACCCTATTGTTCCTGGACACGAGATTGCTGGTGTGGTGACAGAGGTGGGAAGCAAGGTGGAAAAGTTCAAAGTTGGAGACAGAGTTGGTGTGGGGTGCATGGTTGGATCTTGTAGCTCCTGTCAGAACTGTAGTGAAGATAATGAGAATTACTGCCCCAAAATGATTCTCACATACAGTGCCAAGTATGTTGATGGCACCATAACATACGGAGGCTACTCTGACTCAATGGTTGCAGATCAACACTTTGTGGTTCGTATTCCAGATAACCTACCTCTTGATGTTGCTGCTCCTCTCCTCTGTGCTGGAATCACAGTCTATAGCCCTCTCAAATATTATCAACTTGATAAGCCTGGACTTCATATTGGTGTCGTTGGTCTTGGTGGACTTGGTCACATGGCTGTCAAGTTTGCCAAAGCTCTTGGACTTAAGGTCACAGTAATTAGTACCTCTCCCAACAAAAAGAAGGAAGCCATTCAACACATGGGAGCTGATTCATTTGTTGTTAGCCGTGAACAAGATCAGATGATGGCTGTAATGGGAACCTTTGATGGAATCATTGACACAGTTTCTGCTAACCATTCTCTCGTGCCTTTGATTGGCCTGTTGAAGACTCATGGTAAATTAATCATGGTTGGTGCTCCAGAGAAACCTCTCGAGGTTCCAGCATTTGCCTTACTTACGGGGAGGAAGCTGGTTGGTGGAAGTGCAATTGGAGGGATGAAAGAGACGCAAGAAATGATCGATTTTGCTGCGAAGCATGATGTGAAACCTGATATCGAAGTTATTAAGATGGATTATGTGAACACTGCGATGGAACGCCTCCTTAAAGCAGATGTGAAGTATCGATTTGTTATTGATATTGGAAACACGTTGAAGCCAAGTTCCTGA 1086 0.4383 MVSQAETEHPNKAFGWAATDTSGILSPFNFSRRATGEKDVAIKVMYCGICHSDLHMLKNEWNCSIYPIVPGHEIAGVVTEVGSKVEKFKVGDRVGVGCMVGSCSSCQNCSEDNENYCPKMILTYSAKYVDGTITYGGYSDSMVADQHFVVRIPDNLPLDVAAPLLCAGITVYSPLKYYQLDKPGLHIGVVGLGGLGHMAVKFAKALGLKVTVISTSPNKKKEAIQHMGADSFVVSREQDQMMAVMGTFDGIIDTVSANHSLVPLIGLLKTHGKLIMVGAPEKPLEVPAFALLTGRKLVGGSAIGGMKETQEMIDFAAKHDVKPDIEVIKMDYVNTAMERLLKADVKYRFVIDIGNTLKPSS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1109 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vra11g1109 361 PANTHER ALDEHYDE REDUCTASE 1 360 - -
Vra11g1109 361 Gene3D - 167 323 - -
Vra11g1109 361 CDD CAD1 14 352 - -
Vra11g1109 361 SUPERFAMILY GroES-like 20 184 IPR011032 -
Vra11g1109 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Vra11g1109 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vra11g1109 361 Gene3D - 16 353 - -
Vra11g1109 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Vra11g1109 361 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 360 - -
Vra11g1109 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1109 Vra-Chr11 10695287 10697338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1109 12 360 Monolignol Biosynthesis Gene Families AT4G37990 71.060 2.44e-172 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1109 - K23232 gmx:100809071 613.994