Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1108 ATGATGGTGGAAACTGATACGGGGAAACAAGTTCCGATCCAACGGTGGTTTAGAATGGCTTTGCTTCTCAGCTTAATCTTTTTCGGTGCCTGCTCTGACACTTCTGAGAGTGTCTCGTTTAGCAGAGGTTTGAAGACTACTCCTGCAGCTGTACAGCTGAATAAAGATGAAGACCAGGTAGTGATTGGAAACGGCATAGTTTCCCTCAATTTGTCAAATCCCGAAGGCTATATTATTGGATTATATTATGACGGAACTCAGAATATACTTAATAATAAAAACGAAGAATTTGATAGAGGGTACTTGGACGTTGTTTGGAACGAAAATGGAAAACCTGGGATCTTTGAGAGAATCGATGGGGCAAATTTCTCAGTAATTGAAGCAAGTGATACTGTGGTGGAGGTTTCCTTTTTAAAAACATGGACTGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGAGGTGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACCAGGATTACCTGCAGTCACGGTTTATCAAATTAGAATTGTTTACAAACTCGACGAAGACAGATTCCACTATATGGCCATATCTGATACAAGGCAAAGGAAGATGCCAACTGCAGAAGACAGAAGAACGGGCAAGGTGCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGGCAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCAGTACCAGTGGGTTTCTGGGTGATAACACCCACTAATGAGTTCCGCAATGCTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCCCAATTTCTCTTTCCATGTTTACTAGCACTCATTATGCTGGCAAGAAGGTAATCATAGAATTTGATGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCAACTTTTGTTTACCTTAACTCTGCTCCAAGCAAAACTCAGTTCAAGTCTCTATGGTCAGATGCTGTAGAACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATCGGATCAAAAGATTTCATTCCACCCAGTCAACGGGGAATGGTGTCAGGAAAACTTCAAGTTAAAGATGGGGGAGGGATGGCTCAACCAGCTAAAAGTTCTTACGTTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAAGTACACCTTGTATGCATGGGTCCCTGGTTTCATAGGAAATTACAAATATCAAATTAATGTTGTTATCACACCGGGAGACAACATCAACTTGGGTTCACTTGTATACAAACCTCCAAGAAATGGTCCTACTTTATGGGAAATTGGGATACCAGATAGGTCAGCTGCAGAGTTCTATGTACCAGACGTTTACCCAGGGCTTGTGAACAAATTGTACCTAAAGGATAGCAAAAATGGGTTTAGGCAATACGGCTTGTGGGGACGTTACACTGATTTATATCCAAAAAAAGATCTTATTTTCACAGTCGGTGTTTCTGACTATCATAAGGACTGGTTTTATGCTCAAGTTACCAGAAGCACAAAAACGAGTAAATTCATGCCAACCACTTGGCAGATTCAATTCCAGCTTGAGAATATCATAAAGGGAAACTACACACTGCAATTGGCCTTGGCATCTGCCACTAATTCTAAATTGGAGGTTAGGTTCAACAAGCCGAATTCAAACCCTCCATACTTCACAACAGAAGAGCTAATTGGTGATGACAATGCCATAGCAAGGCACGGCATCCATGGATTGTATGAGTTGTATAGTGTAGGTGTAGATAGTAATCAATTGGTAAAAGGAAAAAACACCATCTATTTGACACAGTCAAATGCCAAAACTCCATTTGAAGGAATTATGTATGATTATATTCGTTTGGAAAGTCTTACAACTATAAAATAA 2040 0.4034 MMVETDTGKQVPIQRWFRMALLLSLIFFGACSDTSESVSFSRGLKTTPAAVQLNKDEDQVVIGNGIVSLNLSNPEGYIIGLYYDGTQNILNNKNEEFDRGYLDVVWNENGKPGIFERIDGANFSVIEASDTVVEVSFLKTWTASMKGSSVPINIDLRYILRRGDSGFYSYAIFTRPPGLPAVTVYQIRIVYKLDEDRFHYMAISDTRQRKMPTAEDRRTGKVLAYPEAVLLTHATDPQIRGEVDDKYQYSAENKDNSVHGWIAEDDSVPVGFWVITPTNEFRNAGPVKQELTSHVGPISLSMFTSTHYAGKKVIIEFDEGETYKKVFGPTFVYLNSAPSKTQFKSLWSDAVEQLSNEEKKWPYDFIGSKDFIPPSQRGMVSGKLQVKDGGGMAQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDKDGSFSITNIVPGKYTLYAWVPGFIGNYKYQINVVITPGDNINLGSLVYKPPRNGPTLWEIGIPDRSAAEFYVPDVYPGLVNKLYLKDSKNGFRQYGLWGRYTDLYPKKDLIFTVGVSDYHKDWFYAQVTRSTKTSKFMPTTWQIQFQLENIIKGNYTLQLALASATNSKLEVRFNKPNSNPPYFTTEELIGDDNAIARHGIHGLYELYSVGVDSNQLVKGKNTIYLTQSNAKTPFEGIMYDYIRLESLTTIK* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1108 679 Pfam Polysaccharide lyase family 4, domain III 483 672 IPR029411 -
Vra11g1108 679 CDD RGL4_M 376 473 IPR029413 -
Vra11g1108 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 674 - -
Vra11g1108 679 Pfam Polysaccharide lyase family 4, domain II 397 469 IPR029413 -
Vra11g1108 679 SUPERFAMILY Galactose-binding domain-like 480 673 IPR008979 -
Vra11g1108 679 Gene3D - 50 343 IPR014718 GO:0030246
Vra11g1108 679 SUPERFAMILY Starch-binding domain-like 372 471 IPR013784 GO:0030246
Vra11g1108 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 674 - -
Vra11g1108 679 Gene3D - 481 673 - -
Vra11g1108 679 Pfam Rhamnogalacturonate lyase family 45 243 IPR010325 -
Vra11g1108 679 CDD RGL4_N 59 342 - -
Vra11g1108 679 Gene3D - 372 471 - -
Vra11g1108 679 CDD RGL4_C 485 673 - -
Vra11g1108 679 SUPERFAMILY Galactose mutarotase-like 53 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1108 Vra-Chr11 10685697 10692156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1108 38 678 Polysaccharide Lyase AT1G09880 52.055 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1108 K18195 - gmx:100781089 989.178