Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1107 ATGCATGATCTTCACATTAATTGCTTCCACTTGCAAAGACCTTCAACCGTCGTCAACAACCTAGCTGCGAGCCGTCCACATTCTCCGGTCAAGCTGAATACTGAAAATCCTCACCAGGTGGTGATTGGCAACGGCGTCGTTTCTTTCAACTTGTCAAAACCCGAAGGCCACATCATTGGAATATATGGAACTAGCAATGTACTTGAGCCTAAAAATAAAGAAAACGATAGAGGATACTTGGACGTTGTTTGGAACAAAAATGGAAAAGCTGGCAAGTTTCAGAGAGTTCTTGGGACAAATTTCTCAGTCATTGTAGCAAACAAGAAGATAGTGGAGGTCTCATTTTCAAGAACATGGACGGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGAGATTCTGGTTTTTATTCATACGTAATATTTGAAAGAACACCAGGATTACCTGCGGCGGAGGTTTATCAAGTTAGGATTGTTTTCAAACTCGACGAAGCCAGGTTTCGTTACATCGCCATATCCAATACTAGGCAAAGGAACATGCCTTCTCAGAGCGATAGAGAAATGGGTACACCCTTGGAGTATCCTGAAGCTGTTCTCTTAACTCATCCATCTGACTCACAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAAAACAAAGATAGCCGTGTGCATGGGTGGATTGCCGAGGATGATATAGCAGCAGAAGGTTTTTGGGTGATAACTCCAAGTAATGAGTTCCGCAGTGCTGGCCCTAACAAGCAAGAGTTAACCTCTCATGTTGGTCCAACAACTCTTTCTATGTTCACGAGCACTCACTACGGTGGCAAAGATGTAACCATGAATTTTGGTGAAGGGGAGACTTATAAAAAAGTTTTTGGCCCTATTTTTGTTTATCTTAACTCTTGTCCAAACAAAGCTCGGTTTCGGTCTCTGTGGTCAGATGCCGTAAAACAGTTATTCAAAGAAGTGAGAAGATGGCCTTATGATTTCGTTGGATCGAAAGATTTCATTCCACCCAATCAACGGGGAATAGTGTCAGGAAAACTACAAGTCCAAGATCGGTATATTAGAATAGGGAAAGCTCAACCTGCTAAAAATGCCTACGTTGGACTAGCTTTGCCAGGAAACGCAGGATCATGGCAGAAAGAATGTAAGGGTTATCAATTCTGGACTCAAACTGATAGAAATGGACACTTCTTAATTGAAAATGTTGTACCTGGAGATTACAAATTATATGCATGGGTTCCTGGCTTTATTGGAGATTATATATATCCAACAAAGATTTCCATCAGACCAGGGGGAAACATCAAGTTGGACTCACTTGTATATTATCCTCCAAGAAATGGTCCAACTCTATGGGAAATTGGGATCCCTGATCGCTCAGCTGCAGAATTCTATGTACCAAACCCTAACCCTGGGTTCAGAAACAAACTATACCCCAACAATGGCTCAGACAAGTTTAGGCAATACGGCTTATGGGCACGTTACAGTGAGTTATATCCAAAGTACGATCTCATTTACACAGTCGGTGTTTCAGACTATAATAAGGATTGGTTTTTTGCTCAAGTTACAAGGAGCACAGAAGAAAAAACATTCATGCCAACCACATGGCAGATTCGATTCCAGCTTCAAAATATCTCAAAGGGAGGAAACTACACACTGCAATTGGCCATTGCAGCCGCTACTGGATCTAAATTGGAGGTTAGGTTGAACGAGGCGAAAGCAAAGCGTCCTTACTTCTCAGCAAGGCTAATTGGCAATGACAATGCCATAGCAAGGCACGGAATCCATGGATTGTATGAGTTGTATAGTGTAGTTGTAGGTAGTGATCAATTGGTAAAAGGAAAGAACATCATCTATTTGACTCAGTCATTTGCCAAAAGTCCTTTCATGGGAGTTATGTATGATTATATTCGCTTTGAAACTCCTCCAACGGCTACTCAACTTTGTGCATAG 1995 0.417 MHDLHINCFHLQRPSTVVNNLAASRPHSPVKLNTENPHQVVIGNGVVSFNLSKPEGHIIGIYGTSNVLEPKNKENDRGYLDVVWNKNGKAGKFQRVLGTNFSVIVANKKIVEVSFSRTWTASMKGSSVPINIDQRYILRRGDSGFYSYVIFERTPGLPAAEVYQVRIVFKLDEARFRYIAISNTRQRNMPSQSDREMGTPLEYPEAVLLTHPSDSQFKGEVDDKYQYSSENKDSRVHGWIAEDDIAAEGFWVITPSNEFRSAGPNKQELTSHVGPTTLSMFTSTHYGGKDVTMNFGEGETYKKVFGPIFVYLNSCPNKARFRSLWSDAVKQLFKEVRRWPYDFVGSKDFIPPNQRGIVSGKLQVQDRYIRIGKAQPAKNAYVGLALPGNAGSWQKECKGYQFWTQTDRNGHFLIENVVPGDYKLYAWVPGFIGDYIYPTKISIRPGGNIKLDSLVYYPPRNGPTLWEIGIPDRSAAEFYVPNPNPGFRNKLYPNNGSDKFRQYGLWARYSELYPKYDLIYTVGVSDYNKDWFFAQVTRSTEEKTFMPTTWQIRFQLQNISKGGNYTLQLAIAAATGSKLEVRLNEAKAKRPYFSARLIGNDNAIARHGIHGLYELYSVVVGSDQLVKGKNIIYLTQSFAKSPFMGVMYDYIRFETPPTATQLCA* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1107 664 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
Vra11g1107 664 CDD RGL4_C 466 654 - -
Vra11g1107 664 Pfam Rhamnogalacturonate lyase family 23 221 IPR010325 -
Vra11g1107 664 Pfam Polysaccharide lyase family 4, domain III 464 652 IPR029411 -
Vra11g1107 664 SUPERFAMILY Starch-binding domain-like 352 452 IPR013784 GO:0030246
Vra11g1107 664 SUPERFAMILY Galactose-binding domain-like 461 654 IPR008979 -
Vra11g1107 664 CDD RGL4_M 354 454 IPR029413 -
Vra11g1107 664 Gene3D - 462 654 - -
Vra11g1107 664 SUPERFAMILY Galactose mutarotase-like 34 315 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vra11g1107 664 Pfam Polysaccharide lyase family 4, domain II 378 450 IPR029413 -
Vra11g1107 664 CDD RGL4_N 39 314 - -
Vra11g1107 664 Gene3D - 350 452 - -
Vra11g1107 664 Gene3D - 78 319 IPR014718 GO:0030246
Vra11g1107 664 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1107 Vra-Chr11 10575984 10579523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1107 28 656 Polysaccharide Lyase AT1G09890 54.803 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1107 K18195 - gmx:100781089 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1107 11 10575984 10579523 Vra7g0864 7 18282346 18287676 PCT