Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1104 ATGGGAAGGGGAAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAACTTGCAATCCTCTGTGATGCACAAGTTGGCCTTCTCATATTCTCCAGCACGGGAAAGCTTTACGAGTATGCCAGCACCAGCATGAAATCCATAATTGAGAGATACAATGCATGCAAAGAAGAACAACACCATCAGATAAATCCAGAAGCCGAAGTCAAGTTTTGGAAGAGGGAGGCAGAGATTCTAAGGCAACAACTACAGATTCTACAAGAAAACCATCGGCAAATGATGGGAGAACAACTTTATGGTCTGAGTGTCAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGCCTCCAAGGTGTCCGTATGAAAAAGGAACAAATTCTGAAGGATGAAATCCAAGAGCTGAACCGGAAGGGAAACCTTATCTTCCAGGAAAATGTGGAACTTTACAAGAAGGTGTATGGTACAACAGATACAGCCACAACAAGCAGAAATGCATTTGTTCCACTTCCATTTGGTATGCATGCAGGAGGGCCTCCACAAGAATTAGTCCAACTTCAGTTATGCCAGCCTGAACAAGAAGCTTATGAGACATCAGACACTGCCACAAAATAA 666 0.4294 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTSMKSIIERYNACKEEQHHQINPEAEVKFWKREAEILRQQLQILQENHRQMMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKKVYGTTDTATTSRNAFVPLPFGMHAGGPPQELVQLQLCQPEQEAYETSDTATK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1104 221 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra11g1104 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Vra11g1104 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra11g1104 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 220 - -
Vra11g1104 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra11g1104 221 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vra11g1104 221 Coils Coil 123 143 - -
Vra11g1104 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra11g1104 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra11g1104 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra11g1104 221 Coils Coil 86 113 - -
Vra11g1104 221 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vra11g1104 221 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vra11g1104 221 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra11g1104 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra11g1104 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1104 Vra-Chr11 10490506 10500308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1104 1 220 MADS-box Gene Family AT4G37940 61.364 1.34e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra11g1104 K-box 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1104 K09264 - gmx:100778427 393.275